Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_576 and HP15_577 are separated by 2 nucleotides HP15_577 and HP15_578 are separated by 87 nucleotides HP15_578 and HP15_579 are separated by 134 nucleotides
HP15_576: HP15_576 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein, at 597,808 to 599,025
_576
HP15_577: HP15_577 - mutator MutT protein, at 599,028 to 599,999
_577
HP15_578: HP15_578 - molybdenum cofactor biosynthesis protein C, at 600,087 to 600,569
_578
HP15_579: HP15_579 - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein, at 600,704 to 601,318
_579
Position (kb) 599
600 Strain fitness (log2 ratio) -1
0
1 at 598.299 kb on + strand, within HP15_576 at 598.598 kb on + strand, within HP15_576 at 598.698 kb on - strand, within HP15_576 at 598.701 kb on + strand, within HP15_576 at 598.733 kb on + strand, within HP15_576 at 598.966 kb on + strand at 599.065 kb on - strand at 599.378 kb on + strand, within HP15_577 at 599.438 kb on - strand, within HP15_577 at 600.111 kb on - strand at 600.117 kb on + strand at 600.125 kb on - strand at 600.130 kb on + strand at 600.306 kb on + strand, within HP15_578 at 600.314 kb on - strand, within HP15_578 at 600.563 kb on + strand at 600.637 kb on - strand at 600.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 598,299 + HP15_576 0.40 -0.1 598,598 + HP15_576 0.65 -1.1 598,698 - HP15_576 0.73 -0.3 598,701 + HP15_576 0.73 +1.1 598,733 + HP15_576 0.76 -0.1 598,966 + -0.3 599,065 - -1.6 599,378 + HP15_577 0.36 +0.1 599,438 - HP15_577 0.42 -0.7 600,111 - +0.1 600,117 + +0.4 600,125 - -0.0 600,130 + -0.4 600,306 + HP15_578 0.45 -0.2 600,314 - HP15_578 0.47 -0.1 600,563 + -0.2 600,637 - +0.9 600,694 + -1.1
Or see this region's nucleotide sequence