Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_526 and HP15_527 are separated by 92 nucleotides HP15_527 and HP15_528 overlap by 11 nucleotides
HP15_526: HP15_526 - DNA uptake lipoprotein, at 541,471 to 542,346
_526
HP15_527: HP15_527 - pseudouridine synthase, RluA family, at 542,439 to 543,416
_527
HP15_528: HP15_528 - multi-copper polyphenol oxidoreductase, laccase, at 543,406 to 544,161
_528
Position (kb) 542
543
544 Strain fitness (log2 ratio) -2
-1
0
1 at 541.450 kb on + strand at 541.488 kb on + strand at 541.496 kb on + strand at 541.534 kb on - strand at 542.369 kb on + strand at 542.374 kb on + strand at 542.377 kb on - strand at 542.377 kb on - strand at 542.382 kb on - strand at 542.433 kb on - strand at 542.612 kb on - strand, within HP15_527 at 542.612 kb on - strand, within HP15_527 at 542.617 kb on - strand, within HP15_527 at 542.617 kb on - strand, within HP15_527 at 542.622 kb on - strand, within HP15_527 at 542.849 kb on - strand, within HP15_527 at 543.202 kb on - strand, within HP15_527 at 543.365 kb on + strand at 543.373 kb on - strand at 543.512 kb on + strand, within HP15_528 at 543.512 kb on + strand, within HP15_528 at 543.520 kb on - strand, within HP15_528 at 543.520 kb on - strand, within HP15_528 at 543.520 kb on - strand, within HP15_528 at 543.520 kb on - strand, within HP15_528 at 543.892 kb on + strand, within HP15_528 at 543.910 kb on - strand, within HP15_528 at 543.958 kb on + strand, within HP15_528 at 543.958 kb on + strand, within HP15_528 at 543.966 kb on - strand, within HP15_528 at 544.069 kb on + strand, within HP15_528 at 544.071 kb on + strand, within HP15_528 at 544.072 kb on - strand, within HP15_528 at 544.072 kb on - strand, within HP15_528 at 544.079 kb on - strand, within HP15_528 at 544.164 kb on - strand at 544.164 kb on - strand at 544.175 kb on - strand at 544.238 kb on - strand at 544.238 kb on - strand at 544.238 kb on - strand at 544.238 kb on - strand at 544.240 kb on - strand at 544.260 kb on + strand at 544.261 kb on + strand at 544.273 kb on - strand at 544.358 kb on + strand at 544.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 541,450 + +0.6 541,488 + -0.0 541,496 + +0.0 541,534 - -0.0 542,369 + +0.2 542,374 + +0.0 542,377 - -0.9 542,377 - -0.2 542,382 - +0.4 542,433 - -0.5 542,612 - HP15_527 0.18 -2.0 542,612 - HP15_527 0.18 -0.6 542,617 - HP15_527 0.18 -0.8 542,617 - HP15_527 0.18 -0.2 542,622 - HP15_527 0.19 -1.5 542,849 - HP15_527 0.42 -1.4 543,202 - HP15_527 0.78 -0.5 543,365 + +0.1 543,373 - -0.1 543,512 + HP15_528 0.14 +0.1 543,512 + HP15_528 0.14 +0.5 543,520 - HP15_528 0.15 -0.4 543,520 - HP15_528 0.15 +0.2 543,520 - HP15_528 0.15 +0.3 543,520 - HP15_528 0.15 -0.3 543,892 + HP15_528 0.64 -0.0 543,910 - HP15_528 0.67 -0.5 543,958 + HP15_528 0.73 +0.0 543,958 + HP15_528 0.73 +0.4 543,966 - HP15_528 0.74 +0.1 544,069 + HP15_528 0.88 +0.6 544,071 + HP15_528 0.88 +0.1 544,072 - HP15_528 0.88 -0.1 544,072 - HP15_528 0.88 -0.2 544,079 - HP15_528 0.89 -0.4 544,164 - -0.1 544,164 - +0.1 544,175 - -0.1 544,238 - +0.4 544,238 - -0.6 544,238 - -0.4 544,238 - -0.5 544,240 - -1.0 544,260 + +0.4 544,261 + +0.5 544,273 - +0.2 544,358 + -0.1 544,366 - -0.3
Or see this region's nucleotide sequence