Strain Fitness in Marinobacter adhaerens HP15 around HP15_500

Experiment: m.b. Tetracycline 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_497 and HP15_498 are separated by 17 nucleotidesHP15_498 and HP15_499 are separated by 138 nucleotidesHP15_499 and HP15_500 are separated by 110 nucleotidesHP15_500 and HP15_501 are separated by 33 nucleotides HP15_497: HP15_497 - phosphatidylglycerophosphatase A, at 511,351 to 511,878 _497 HP15_498: HP15_498 - thiolase-like protein, at 511,896 to 512,099 _498 HP15_499: HP15_499 - hypothetical protein, at 512,238 to 512,348 _499 HP15_500: HP15_500 - conserved hypothetical protein, at 512,459 to 513,064 _500 HP15_501: HP15_501 - acyltransferase, WS/DGAT/MGAT, at 513,098 to 514,684 _501 Position (kb) 512 513 514Strain fitness (log2 ratio) -2 -1 0 1at 511.998 kb on - strand, within HP15_498at 512.000 kb on - strand, within HP15_498at 512.000 kb on - strand, within HP15_498at 512.028 kb on + strand, within HP15_498at 512.113 kb on - strandat 512.376 kb on + strandat 512.455 kb on - strandat 512.551 kb on + strand, within HP15_500at 512.551 kb on - strand, within HP15_500at 512.635 kb on - strand, within HP15_500at 512.785 kb on - strand, within HP15_500at 512.985 kb on + strand, within HP15_500at 512.985 kb on + strand, within HP15_500at 513.003 kb on - strand, within HP15_500at 513.073 kb on - strandat 513.167 kb on + strandat 513.167 kb on + strandat 513.172 kb on + strandat 513.180 kb on - strandat 513.218 kb on - strandat 513.363 kb on + strand, within HP15_501at 513.363 kb on - strand, within HP15_501at 513.400 kb on + strand, within HP15_501at 513.400 kb on + strand, within HP15_501at 513.433 kb on - strand, within HP15_501at 513.479 kb on - strand, within HP15_501at 513.525 kb on - strand, within HP15_501at 513.528 kb on + strand, within HP15_501at 513.528 kb on + strand, within HP15_501at 513.581 kb on + strand, within HP15_501at 513.586 kb on + strand, within HP15_501at 513.588 kb on - strand, within HP15_501at 513.802 kb on - strand, within HP15_501at 514.060 kb on - strand, within HP15_501

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
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511,998 - HP15_498 0.50 +0.3
512,000 - HP15_498 0.51 -0.5
512,000 - HP15_498 0.51 +0.2
512,028 + HP15_498 0.65 -0.4
512,113 - +0.2
512,376 + -1.6
512,455 - -1.4
512,551 + HP15_500 0.15 -1.1
512,551 - HP15_500 0.15 -1.7
512,635 - HP15_500 0.29 -2.3
512,785 - HP15_500 0.54 -1.9
512,985 + HP15_500 0.87 -1.5
512,985 + HP15_500 0.87 -1.4
513,003 - HP15_500 0.90 -1.6
513,073 - -1.0
513,167 + -0.3
513,167 + +0.1
513,172 + -0.7
513,180 - +0.1
513,218 - -0.7
513,363 + HP15_501 0.17 +0.0
513,363 - HP15_501 0.17 -0.0
513,400 + HP15_501 0.19 +0.6
513,400 + HP15_501 0.19 -0.2
513,433 - HP15_501 0.21 -0.2
513,479 - HP15_501 0.24 -0.3
513,525 - HP15_501 0.27 +0.3
513,528 + HP15_501 0.27 -0.1
513,528 + HP15_501 0.27 +0.4
513,581 + HP15_501 0.30 -0.2
513,586 + HP15_501 0.31 -0.3
513,588 - HP15_501 0.31 -0.3
513,802 - HP15_501 0.44 +0.3
514,060 - HP15_501 0.61 -0.1

Or see this region's nucleotide sequence