Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_484 and HP15_485 are separated by 216 nucleotides HP15_485 and HP15_486 are separated by 27 nucleotides HP15_486 and HP15_487 are separated by 252 nucleotides
HP15_484: HP15_484 - uroporphyrinogen decarboxylase, at 499,879 to 500,943
_484
HP15_485: HP15_485 - hypothetical protein, at 501,160 to 501,264
_485
HP15_486: HP15_486 - type IV pilus assembly PilZ, at 501,292 to 501,564
_486
HP15_487: HP15_487 - DNA repair protein RadA, at 501,817 to 503,193
_487
Position (kb) 501
502 Strain fitness (log2 ratio) -1
0
1 at 500.961 kb on + strand at 500.969 kb on - strand at 501.058 kb on - strand at 501.087 kb on - strand at 501.115 kb on - strand at 501.185 kb on + strand, within HP15_485 at 501.279 kb on - strand at 501.292 kb on - strand at 501.350 kb on + strand, within HP15_486 at 501.350 kb on + strand, within HP15_486 at 501.358 kb on - strand, within HP15_486 at 501.529 kb on + strand, within HP15_486 at 501.539 kb on - strand at 501.652 kb on - strand at 501.659 kb on + strand at 501.664 kb on + strand at 501.672 kb on - strand at 501.708 kb on - strand at 501.814 kb on + strand at 501.913 kb on - strand at 502.029 kb on - strand, within HP15_487 at 502.087 kb on + strand, within HP15_487 at 502.197 kb on + strand, within HP15_487 at 502.209 kb on + strand, within HP15_487
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 500,961 + +0.9 500,969 - -0.2 501,058 - +0.3 501,087 - +0.3 501,115 - -0.5 501,185 + HP15_485 0.24 -0.6 501,279 - +0.3 501,292 - +0.4 501,350 + HP15_486 0.21 -0.5 501,350 + HP15_486 0.21 +0.0 501,358 - HP15_486 0.24 -0.2 501,529 + HP15_486 0.87 -1.0 501,539 - +0.3 501,652 - +0.7 501,659 + +0.5 501,664 + -0.2 501,672 - -0.9 501,708 - +1.3 501,814 + -0.4 501,913 - +0.2 502,029 - HP15_487 0.15 -0.1 502,087 + HP15_487 0.20 -0.1 502,197 + HP15_487 0.28 +0.1 502,209 + HP15_487 0.28 +0.1
Or see this region's nucleotide sequence