Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g94 and HP15_p187g95 are separated by 2 nucleotides HP15_p187g95 and HP15_p187g96 are separated by 154 nucleotides HP15_p187g96 and HP15_p187g97 are separated by 12 nucleotides HP15_p187g97 and HP15_p187g98 are separated by 60 nucleotides HP15_p187g98 and HP15_p187g99 are separated by 59 nucleotides
HP15_p187g94: HP15_p187g94 - radical SAM domain protein, at 89,956 to 91,000
_p187g94
HP15_p187g95: HP15_p187g95 - hypothetical protein, at 91,003 to 91,122
_p187g95
HP15_p187g96: HP15_p187g96 - hypothetical protein, at 91,277 to 91,423
_p187g96
HP15_p187g97: HP15_p187g97 - sodium/solute symporter-like protein, at 91,436 to 92,797
_p187g97
HP15_p187g98: HP15_p187g98 - hypothetical protein, at 92,858 to 92,974
_p187g98
HP15_p187g99: HP15_p187g99 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 93,034 to 94,338
_p187g99
Position (kb) 91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 90.444 kb on + strand, within HP15_p187g94 at 90.474 kb on - strand, within HP15_p187g94 at 90.499 kb on + strand, within HP15_p187g94 at 90.499 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.689 kb on + strand, within HP15_p187g94 at 90.697 kb on - strand, within HP15_p187g94 at 90.713 kb on + strand, within HP15_p187g94 at 90.715 kb on + strand, within HP15_p187g94 at 90.727 kb on - strand, within HP15_p187g94 at 90.744 kb on + strand, within HP15_p187g94 at 90.762 kb on + strand, within HP15_p187g94 at 90.763 kb on - strand, within HP15_p187g94 at 90.763 kb on - strand, within HP15_p187g94 at 90.765 kb on + strand, within HP15_p187g94 at 90.808 kb on - strand, within HP15_p187g94 at 90.813 kb on + strand, within HP15_p187g94 at 90.813 kb on + strand, within HP15_p187g94 at 90.821 kb on - strand, within HP15_p187g94 at 90.832 kb on + strand, within HP15_p187g94 at 90.862 kb on - strand, within HP15_p187g94 at 90.879 kb on - strand, within HP15_p187g94 at 90.916 kb on + strand at 90.916 kb on + strand at 90.916 kb on + strand at 90.916 kb on + strand at 90.916 kb on + strand at 90.916 kb on + strand at 90.918 kb on + strand at 90.918 kb on + strand at 90.918 kb on + strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.926 kb on - strand at 90.926 kb on - strand at 90.960 kb on - strand at 91.293 kb on + strand, within HP15_p187g96 at 91.376 kb on + strand, within HP15_p187g96 at 91.397 kb on - strand, within HP15_p187g96 at 91.459 kb on + strand at 91.459 kb on + strand at 91.459 kb on + strand at 91.459 kb on + strand at 91.485 kb on + strand at 91.485 kb on + strand at 91.485 kb on - strand at 91.490 kb on + strand at 91.498 kb on - strand at 91.498 kb on - strand at 91.553 kb on - strand at 91.553 kb on - strand at 91.555 kb on + strand at 91.555 kb on + strand at 91.558 kb on - strand at 91.563 kb on - strand at 91.576 kb on - strand, within HP15_p187g97 at 91.576 kb on - strand, within HP15_p187g97 at 91.667 kb on + strand, within HP15_p187g97 at 91.672 kb on + strand, within HP15_p187g97 at 91.801 kb on - strand, within HP15_p187g97 at 91.856 kb on + strand, within HP15_p187g97 at 91.884 kb on + strand, within HP15_p187g97 at 91.922 kb on + strand, within HP15_p187g97 at 91.933 kb on + strand, within HP15_p187g97 at 91.941 kb on - strand, within HP15_p187g97 at 91.951 kb on - strand, within HP15_p187g97 at 91.953 kb on + strand, within HP15_p187g97 at 91.977 kb on + strand, within HP15_p187g97 at 91.990 kb on - strand, within HP15_p187g97 at 91.990 kb on - strand, within HP15_p187g97 at 92.088 kb on - strand, within HP15_p187g97 at 92.207 kb on - strand, within HP15_p187g97 at 92.224 kb on - strand, within HP15_p187g97 at 92.231 kb on - strand, within HP15_p187g97 at 92.269 kb on + strand, within HP15_p187g97 at 92.277 kb on - strand, within HP15_p187g97 at 92.277 kb on - strand, within HP15_p187g97 at 92.277 kb on - strand, within HP15_p187g97 at 92.277 kb on - strand, within HP15_p187g97 at 92.293 kb on - strand, within HP15_p187g97 at 92.298 kb on - strand, within HP15_p187g97 at 92.306 kb on + strand, within HP15_p187g97 at 92.307 kb on + strand, within HP15_p187g97 at 92.426 kb on - strand, within HP15_p187g97 at 92.436 kb on - strand, within HP15_p187g97 at 92.436 kb on - strand, within HP15_p187g97 at 92.436 kb on - strand, within HP15_p187g97 at 92.445 kb on - strand, within HP15_p187g97 at 92.524 kb on - strand, within HP15_p187g97 at 92.568 kb on + strand, within HP15_p187g97 at 92.575 kb on + strand, within HP15_p187g97 at 92.623 kb on + strand, within HP15_p187g97 at 92.631 kb on - strand, within HP15_p187g97 at 92.662 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.667 kb on - strand at 92.689 kb on + strand at 92.706 kb on - strand at 92.729 kb on + strand at 92.755 kb on + strand at 92.761 kb on + strand at 92.828 kb on + strand at 92.922 kb on - strand, within HP15_p187g98 at 92.926 kb on + strand, within HP15_p187g98 at 92.929 kb on - strand, within HP15_p187g98 at 92.929 kb on - strand, within HP15_p187g98 at 92.974 kb on + strand at 92.982 kb on - strand at 93.002 kb on + strand at 93.008 kb on + strand at 93.008 kb on + strand at 93.011 kb on - strand at 93.016 kb on - strand at 93.018 kb on + strand at 93.018 kb on + strand at 93.026 kb on - strand at 93.026 kb on - strand at 93.026 kb on - strand at 93.026 kb on - strand at 93.026 kb on - strand at 93.084 kb on - strand at 93.087 kb on + strand at 93.095 kb on - strand at 93.095 kb on - strand at 93.097 kb on + strand at 93.097 kb on + strand at 93.105 kb on - strand at 93.109 kb on + strand at 93.117 kb on - strand at 93.119 kb on + strand at 93.136 kb on - strand at 93.240 kb on + strand, within HP15_p187g99 at 93.264 kb on + strand, within HP15_p187g99 at 93.286 kb on - strand, within HP15_p187g99 at 93.316 kb on + strand, within HP15_p187g99 at 93.394 kb on + strand, within HP15_p187g99 at 93.407 kb on - strand, within HP15_p187g99 at 93.423 kb on - strand, within HP15_p187g99 at 93.425 kb on - strand, within HP15_p187g99 at 93.426 kb on + strand, within HP15_p187g99 at 93.530 kb on - strand, within HP15_p187g99 at 93.712 kb on + strand, within HP15_p187g99 at 93.720 kb on - strand, within HP15_p187g99 at 93.752 kb on - strand, within HP15_p187g99 at 93.792 kb on - strand, within HP15_p187g99 at 93.792 kb on - strand, within HP15_p187g99
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 90,444 + HP15_p187g94 0.47 +0.2 90,474 - HP15_p187g94 0.50 +0.3 90,499 + HP15_p187g94 0.52 +0.2 90,499 - HP15_p187g94 0.52 -0.2 90,596 - HP15_p187g94 0.61 -0.2 90,596 - HP15_p187g94 0.61 -0.1 90,596 - HP15_p187g94 0.61 +0.0 90,596 - HP15_p187g94 0.61 -0.5 90,689 + HP15_p187g94 0.70 +0.2 90,697 - HP15_p187g94 0.71 +0.1 90,713 + HP15_p187g94 0.72 +0.4 90,715 + HP15_p187g94 0.73 -1.5 90,727 - HP15_p187g94 0.74 -0.2 90,744 + HP15_p187g94 0.75 -0.4 90,762 + HP15_p187g94 0.77 +0.3 90,763 - HP15_p187g94 0.77 -0.5 90,763 - HP15_p187g94 0.77 +1.0 90,765 + HP15_p187g94 0.77 -0.0 90,808 - HP15_p187g94 0.82 +0.3 90,813 + HP15_p187g94 0.82 -0.6 90,813 + HP15_p187g94 0.82 +0.6 90,821 - HP15_p187g94 0.83 +0.3 90,832 + HP15_p187g94 0.84 +0.1 90,862 - HP15_p187g94 0.87 +0.0 90,879 - HP15_p187g94 0.88 +0.1 90,916 + +0.0 90,916 + +0.2 90,916 + +0.2 90,916 + -0.5 90,916 + -0.1 90,916 + +0.3 90,918 + +0.3 90,918 + -0.2 90,918 + +0.4 90,924 - +0.6 90,924 - -0.1 90,924 - -0.1 90,924 - +0.1 90,924 - +0.4 90,924 - +0.9 90,924 - -0.1 90,924 - -0.0 90,926 - +0.3 90,926 - -0.4 90,960 - -0.2 91,293 + HP15_p187g96 0.11 -0.4 91,376 + HP15_p187g96 0.67 +0.1 91,397 - HP15_p187g96 0.82 +0.3 91,459 + +0.6 91,459 + -0.2 91,459 + -0.4 91,459 + -0.4 91,485 + +0.1 91,485 + -0.0 91,485 - -0.3 91,490 + -0.1 91,498 - +0.2 91,498 - +0.9 91,553 - +0.5 91,553 - -1.3 91,555 + -0.0 91,555 + +0.4 91,558 - +0.1 91,563 - -0.1 91,576 - HP15_p187g97 0.10 -0.7 91,576 - HP15_p187g97 0.10 -0.8 91,667 + HP15_p187g97 0.17 -0.7 91,672 + HP15_p187g97 0.17 +0.6 91,801 - HP15_p187g97 0.27 -0.6 91,856 + HP15_p187g97 0.31 -0.8 91,884 + HP15_p187g97 0.33 +1.3 91,922 + HP15_p187g97 0.36 -0.1 91,933 + HP15_p187g97 0.36 -0.1 91,941 - HP15_p187g97 0.37 -0.3 91,951 - HP15_p187g97 0.38 -0.2 91,953 + HP15_p187g97 0.38 +0.4 91,977 + HP15_p187g97 0.40 -0.3 91,990 - HP15_p187g97 0.41 -0.1 91,990 - HP15_p187g97 0.41 +0.8 92,088 - HP15_p187g97 0.48 +0.2 92,207 - HP15_p187g97 0.57 -0.5 92,224 - HP15_p187g97 0.58 -0.8 92,231 - HP15_p187g97 0.58 +0.4 92,269 + HP15_p187g97 0.61 +0.3 92,277 - HP15_p187g97 0.62 -0.0 92,277 - HP15_p187g97 0.62 -0.2 92,277 - HP15_p187g97 0.62 -0.4 92,277 - HP15_p187g97 0.62 +0.3 92,293 - HP15_p187g97 0.63 -0.5 92,298 - HP15_p187g97 0.63 +0.3 92,306 + HP15_p187g97 0.64 +0.2 92,307 + HP15_p187g97 0.64 +0.8 92,426 - HP15_p187g97 0.73 +0.1 92,436 - HP15_p187g97 0.73 -0.4 92,436 - HP15_p187g97 0.73 -0.7 92,436 - HP15_p187g97 0.73 +0.1 92,445 - HP15_p187g97 0.74 -0.5 92,524 - HP15_p187g97 0.80 +0.1 92,568 + HP15_p187g97 0.83 -0.2 92,575 + HP15_p187g97 0.84 -0.2 92,623 + HP15_p187g97 0.87 -0.6 92,631 - HP15_p187g97 0.88 -0.6 92,662 - -0.0 92,663 - -0.4 92,663 - -2.8 92,663 - +0.2 92,663 - +0.6 92,663 - -1.6 92,663 - +0.7 92,667 - -0.1 92,689 + -0.4 92,706 - -0.2 92,729 + +0.1 92,755 + +0.2 92,761 + -0.2 92,828 + -1.1 92,922 - HP15_p187g98 0.55 -0.4 92,926 + HP15_p187g98 0.58 +0.5 92,929 - HP15_p187g98 0.61 +0.0 92,929 - HP15_p187g98 0.61 +0.5 92,974 + -0.5 92,982 - +0.3 93,002 + -0.1 93,008 + +1.1 93,008 + -2.3 93,011 - +0.2 93,016 - +0.2 93,018 + +0.9 93,018 + -0.0 93,026 - +0.3 93,026 - +0.2 93,026 - +0.2 93,026 - +0.1 93,026 - -0.6 93,084 - -0.5 93,087 + -0.1 93,095 - -0.5 93,095 - +0.3 93,097 + -0.1 93,097 + -0.8 93,105 - +0.3 93,109 + -0.0 93,117 - +0.3 93,119 + -0.3 93,136 - -0.1 93,240 + HP15_p187g99 0.16 -0.0 93,264 + HP15_p187g99 0.18 +0.5 93,286 - HP15_p187g99 0.19 -0.5 93,316 + HP15_p187g99 0.22 +0.3 93,394 + HP15_p187g99 0.28 +0.4 93,407 - HP15_p187g99 0.29 -0.3 93,423 - HP15_p187g99 0.30 +0.4 93,425 - HP15_p187g99 0.30 +0.6 93,426 + HP15_p187g99 0.30 -0.7 93,530 - HP15_p187g99 0.38 +0.2 93,712 + HP15_p187g99 0.52 +0.5 93,720 - HP15_p187g99 0.53 +0.1 93,752 - HP15_p187g99 0.55 -0.8 93,792 - HP15_p187g99 0.58 -1.4 93,792 - HP15_p187g99 0.58 -0.6
Or see this region's nucleotide sequence