Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g78 and HP15_p187g79 are separated by 379 nucleotides HP15_p187g79 and HP15_p187g80 are separated by 119 nucleotides
HP15_p187g78: HP15_p187g78 - conserved hypothetical protein, secreted, at 72,109 to 75,369
_p187g78
HP15_p187g79: HP15_p187g79 - conserved hypothetical protein, at 75,749 to 76,516
_p187g79
HP15_p187g80: HP15_p187g80 - hypothetical protein, at 76,636 to 78,234
_p187g80
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 74.752 kb on + strand, within HP15_p187g78 at 74.752 kb on + strand, within HP15_p187g78 at 74.757 kb on + strand, within HP15_p187g78 at 74.757 kb on + strand, within HP15_p187g78 at 74.757 kb on + strand, within HP15_p187g78 at 74.757 kb on + strand, within HP15_p187g78 at 74.757 kb on + strand, within HP15_p187g78 at 74.757 kb on + strand, within HP15_p187g78 at 74.762 kb on + strand, within HP15_p187g78 at 74.762 kb on + strand, within HP15_p187g78 at 74.762 kb on + strand, within HP15_p187g78 at 74.762 kb on + strand, within HP15_p187g78 at 74.762 kb on + strand, within HP15_p187g78 at 74.765 kb on - strand, within HP15_p187g78 at 74.765 kb on - strand, within HP15_p187g78 at 74.765 kb on - strand, within HP15_p187g78 at 74.765 kb on - strand, within HP15_p187g78 at 74.765 kb on - strand, within HP15_p187g78 at 74.765 kb on - strand, within HP15_p187g78 at 74.768 kb on - strand, within HP15_p187g78 at 74.770 kb on - strand, within HP15_p187g78 at 74.770 kb on - strand, within HP15_p187g78 at 74.770 kb on - strand, within HP15_p187g78 at 74.770 kb on - strand, within HP15_p187g78 at 74.807 kb on + strand, within HP15_p187g78 at 74.815 kb on - strand, within HP15_p187g78 at 74.835 kb on - strand, within HP15_p187g78 at 74.863 kb on + strand, within HP15_p187g78 at 74.864 kb on - strand, within HP15_p187g78 at 74.873 kb on + strand, within HP15_p187g78 at 74.881 kb on + strand, within HP15_p187g78 at 74.881 kb on + strand, within HP15_p187g78 at 74.881 kb on + strand, within HP15_p187g78 at 74.889 kb on - strand, within HP15_p187g78 at 74.890 kb on - strand, within HP15_p187g78 at 74.890 kb on - strand, within HP15_p187g78 at 74.910 kb on + strand, within HP15_p187g78 at 74.917 kb on - strand, within HP15_p187g78 at 74.936 kb on - strand, within HP15_p187g78 at 74.946 kb on + strand, within HP15_p187g78 at 74.946 kb on + strand, within HP15_p187g78 at 74.954 kb on - strand, within HP15_p187g78 at 74.954 kb on - strand, within HP15_p187g78 at 74.954 kb on - strand, within HP15_p187g78 at 74.954 kb on - strand, within HP15_p187g78 at 74.959 kb on - strand, within HP15_p187g78 at 74.960 kb on + strand, within HP15_p187g78 at 74.960 kb on + strand, within HP15_p187g78 at 74.968 kb on - strand, within HP15_p187g78 at 74.968 kb on - strand, within HP15_p187g78 at 74.989 kb on - strand, within HP15_p187g78 at 74.991 kb on - strand, within HP15_p187g78 at 74.996 kb on + strand, within HP15_p187g78 at 74.996 kb on + strand, within HP15_p187g78 at 75.004 kb on - strand, within HP15_p187g78 at 75.004 kb on - strand, within HP15_p187g78 at 75.004 kb on - strand, within HP15_p187g78 at 75.011 kb on - strand, within HP15_p187g78 at 75.016 kb on - strand, within HP15_p187g78 at 75.078 kb on - strand at 75.094 kb on - strand at 75.101 kb on + strand at 75.101 kb on - strand at 75.109 kb on - strand at 75.151 kb on + strand at 75.201 kb on + strand at 75.201 kb on + strand at 75.209 kb on - strand at 75.209 kb on - strand at 75.222 kb on + strand at 75.230 kb on - strand at 75.244 kb on - strand at 75.270 kb on - strand at 75.310 kb on + strand at 75.313 kb on - strand at 75.373 kb on + strand at 75.464 kb on + strand at 75.470 kb on - strand at 75.486 kb on - strand at 75.498 kb on + strand at 75.506 kb on - strand at 75.508 kb on + strand at 75.508 kb on + strand at 75.516 kb on - strand at 75.516 kb on - strand at 75.536 kb on - strand at 75.565 kb on - strand at 75.709 kb on + strand at 75.717 kb on - strand at 75.840 kb on - strand, within HP15_p187g79 at 75.876 kb on + strand, within HP15_p187g79 at 75.876 kb on + strand, within HP15_p187g79 at 75.876 kb on + strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.884 kb on - strand, within HP15_p187g79 at 75.987 kb on - strand, within HP15_p187g79 at 75.987 kb on - strand, within HP15_p187g79 at 75.989 kb on - strand, within HP15_p187g79 at 76.024 kb on - strand, within HP15_p187g79 at 76.058 kb on + strand, within HP15_p187g79 at 76.066 kb on - strand, within HP15_p187g79 at 76.068 kb on + strand, within HP15_p187g79 at 76.068 kb on + strand, within HP15_p187g79 at 76.096 kb on + strand, within HP15_p187g79 at 76.137 kb on - strand, within HP15_p187g79 at 76.202 kb on + strand, within HP15_p187g79 at 76.207 kb on + strand, within HP15_p187g79 at 76.207 kb on + strand, within HP15_p187g79 at 76.210 kb on - strand, within HP15_p187g79 at 76.210 kb on - strand, within HP15_p187g79 at 76.215 kb on - strand, within HP15_p187g79 at 76.217 kb on + strand, within HP15_p187g79 at 76.345 kb on - strand, within HP15_p187g79 at 76.370 kb on - strand, within HP15_p187g79 at 76.372 kb on + strand, within HP15_p187g79 at 76.385 kb on - strand, within HP15_p187g79 at 76.396 kb on + strand, within HP15_p187g79 at 76.396 kb on + strand, within HP15_p187g79 at 76.436 kb on + strand, within HP15_p187g79 at 76.454 kb on - strand at 76.454 kb on - strand at 76.571 kb on - strand at 76.572 kb on - strand at 76.613 kb on - strand at 76.643 kb on + strand at 76.643 kb on + strand at 76.648 kb on + strand at 76.651 kb on - strand at 76.653 kb on + strand at 76.660 kb on + strand at 76.661 kb on - strand at 76.668 kb on + strand at 76.668 kb on + strand at 76.676 kb on - strand at 76.676 kb on - strand at 76.676 kb on - strand at 76.676 kb on - strand at 76.771 kb on + strand at 76.779 kb on - strand at 76.789 kb on + strand at 76.789 kb on + strand at 76.797 kb on - strand, within HP15_p187g80 at 76.797 kb on - strand, within HP15_p187g80 at 76.833 kb on - strand, within HP15_p187g80 at 76.872 kb on - strand, within HP15_p187g80 at 76.909 kb on + strand, within HP15_p187g80 at 76.912 kb on + strand, within HP15_p187g80 at 76.930 kb on + strand, within HP15_p187g80 at 76.938 kb on - strand, within HP15_p187g80 at 76.938 kb on - strand, within HP15_p187g80 at 76.948 kb on - strand, within HP15_p187g80 at 76.980 kb on + strand, within HP15_p187g80 at 76.994 kb on + strand, within HP15_p187g80 at 77.028 kb on + strand, within HP15_p187g80 at 77.069 kb on + strand, within HP15_p187g80 at 77.075 kb on + strand, within HP15_p187g80 at 77.077 kb on + strand, within HP15_p187g80 at 77.083 kb on - strand, within HP15_p187g80 at 77.085 kb on + strand, within HP15_p187g80 at 77.090 kb on - strand, within HP15_p187g80 at 77.097 kb on + strand, within HP15_p187g80 at 77.114 kb on + strand, within HP15_p187g80 at 77.205 kb on - strand, within HP15_p187g80 at 77.242 kb on - strand, within HP15_p187g80 at 77.282 kb on - strand, within HP15_p187g80 at 77.298 kb on + strand, within HP15_p187g80 at 77.306 kb on - strand, within HP15_p187g80 at 77.308 kb on + strand, within HP15_p187g80 at 77.308 kb on + strand, within HP15_p187g80 at 77.316 kb on - strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.376 kb on - strand, within HP15_p187g80 at 77.463 kb on - strand, within HP15_p187g80 at 77.463 kb on - strand, within HP15_p187g80 at 77.493 kb on + strand, within HP15_p187g80 at 77.493 kb on + strand, within HP15_p187g80 at 77.493 kb on + strand, within HP15_p187g80 at 77.493 kb on - strand, within HP15_p187g80 at 77.501 kb on - strand, within HP15_p187g80
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 74,752 + HP15_p187g78 0.81 +2.1 74,752 + HP15_p187g78 0.81 -0.5 74,757 + HP15_p187g78 0.81 +0.0 74,757 + HP15_p187g78 0.81 -0.4 74,757 + HP15_p187g78 0.81 -0.1 74,757 + HP15_p187g78 0.81 +0.2 74,757 + HP15_p187g78 0.81 +0.2 74,757 + HP15_p187g78 0.81 -1.1 74,762 + HP15_p187g78 0.81 +0.4 74,762 + HP15_p187g78 0.81 +0.1 74,762 + HP15_p187g78 0.81 -0.1 74,762 + HP15_p187g78 0.81 -0.0 74,762 + HP15_p187g78 0.81 +0.8 74,765 - HP15_p187g78 0.81 -0.2 74,765 - HP15_p187g78 0.81 +0.2 74,765 - HP15_p187g78 0.81 +0.4 74,765 - HP15_p187g78 0.81 -1.5 74,765 - HP15_p187g78 0.81 +0.5 74,765 - HP15_p187g78 0.81 -0.2 74,768 - HP15_p187g78 0.82 -0.5 74,770 - HP15_p187g78 0.82 -0.3 74,770 - HP15_p187g78 0.82 -0.5 74,770 - HP15_p187g78 0.82 +0.1 74,770 - HP15_p187g78 0.82 -0.8 74,807 + HP15_p187g78 0.83 -0.1 74,815 - HP15_p187g78 0.83 -0.7 74,835 - HP15_p187g78 0.84 -0.5 74,863 + HP15_p187g78 0.84 -0.2 74,864 - HP15_p187g78 0.84 -0.4 74,873 + HP15_p187g78 0.85 +0.1 74,881 + HP15_p187g78 0.85 +0.1 74,881 + HP15_p187g78 0.85 -0.1 74,881 + HP15_p187g78 0.85 +0.0 74,889 - HP15_p187g78 0.85 +0.8 74,890 - HP15_p187g78 0.85 +1.3 74,890 - HP15_p187g78 0.85 +0.8 74,910 + HP15_p187g78 0.86 +0.3 74,917 - HP15_p187g78 0.86 +0.5 74,936 - HP15_p187g78 0.87 +0.2 74,946 + HP15_p187g78 0.87 -0.0 74,946 + HP15_p187g78 0.87 -0.2 74,954 - HP15_p187g78 0.87 +0.4 74,954 - HP15_p187g78 0.87 +0.8 74,954 - HP15_p187g78 0.87 +0.2 74,954 - HP15_p187g78 0.87 +0.0 74,959 - HP15_p187g78 0.87 -0.7 74,960 + HP15_p187g78 0.87 -0.2 74,960 + HP15_p187g78 0.87 -0.1 74,968 - HP15_p187g78 0.88 -1.4 74,968 - HP15_p187g78 0.88 -0.1 74,989 - HP15_p187g78 0.88 +0.3 74,991 - HP15_p187g78 0.88 +0.5 74,996 + HP15_p187g78 0.89 +0.3 74,996 + HP15_p187g78 0.89 +0.0 75,004 - HP15_p187g78 0.89 +0.3 75,004 - HP15_p187g78 0.89 -0.3 75,004 - HP15_p187g78 0.89 -0.3 75,011 - HP15_p187g78 0.89 +0.1 75,016 - HP15_p187g78 0.89 +0.1 75,078 - -0.5 75,094 - -0.3 75,101 + +0.2 75,101 - +0.7 75,109 - +0.0 75,151 + +0.8 75,201 + -0.1 75,201 + +0.6 75,209 - -0.2 75,209 - -0.1 75,222 + -0.2 75,230 - +0.3 75,244 - -0.4 75,270 - -2.5 75,310 + +0.3 75,313 - +1.0 75,373 + -0.9 75,464 + +1.1 75,470 - +0.5 75,486 - +1.4 75,498 + -0.1 75,506 - +1.3 75,508 + -0.1 75,508 + +0.1 75,516 - +0.2 75,516 - +1.4 75,536 - -0.4 75,565 - -0.8 75,709 + +0.1 75,717 - -0.0 75,840 - HP15_p187g79 0.12 -0.3 75,876 + HP15_p187g79 0.17 -1.0 75,876 + HP15_p187g79 0.17 -0.5 75,876 + HP15_p187g79 0.17 -0.3 75,884 - HP15_p187g79 0.18 -0.2 75,884 - HP15_p187g79 0.18 -0.4 75,884 - HP15_p187g79 0.18 -0.6 75,884 - HP15_p187g79 0.18 -0.7 75,884 - HP15_p187g79 0.18 -0.0 75,884 - HP15_p187g79 0.18 -1.0 75,884 - HP15_p187g79 0.18 -0.6 75,884 - HP15_p187g79 0.18 -1.3 75,884 - HP15_p187g79 0.18 -0.2 75,987 - HP15_p187g79 0.31 -1.2 75,987 - HP15_p187g79 0.31 -2.3 75,989 - HP15_p187g79 0.31 -0.2 76,024 - HP15_p187g79 0.36 -0.2 76,058 + HP15_p187g79 0.40 -0.3 76,066 - HP15_p187g79 0.41 -0.4 76,068 + HP15_p187g79 0.42 -1.0 76,068 + HP15_p187g79 0.42 -1.2 76,096 + HP15_p187g79 0.45 +0.6 76,137 - HP15_p187g79 0.51 -0.9 76,202 + HP15_p187g79 0.59 -1.5 76,207 + HP15_p187g79 0.60 +0.3 76,207 + HP15_p187g79 0.60 -0.3 76,210 - HP15_p187g79 0.60 -1.3 76,210 - HP15_p187g79 0.60 -0.8 76,215 - HP15_p187g79 0.61 +0.0 76,217 + HP15_p187g79 0.61 -0.1 76,345 - HP15_p187g79 0.78 +0.0 76,370 - HP15_p187g79 0.81 -0.0 76,372 + HP15_p187g79 0.81 -0.7 76,385 - HP15_p187g79 0.83 -0.3 76,396 + HP15_p187g79 0.84 -0.8 76,396 + HP15_p187g79 0.84 -0.6 76,436 + HP15_p187g79 0.89 -0.0 76,454 - -1.2 76,454 - +0.3 76,571 - +1.7 76,572 - +0.1 76,613 - -0.3 76,643 + +0.8 76,643 + +0.8 76,648 + +0.0 76,651 - +2.1 76,653 + -0.5 76,660 + +0.5 76,661 - +0.1 76,668 + +0.8 76,668 + -0.5 76,676 - +0.2 76,676 - +0.6 76,676 - +1.8 76,676 - +1.6 76,771 + +0.2 76,779 - -0.2 76,789 + +1.0 76,789 + +0.7 76,797 - HP15_p187g80 0.10 +0.0 76,797 - HP15_p187g80 0.10 -0.3 76,833 - HP15_p187g80 0.12 +0.2 76,872 - HP15_p187g80 0.15 +0.2 76,909 + HP15_p187g80 0.17 +0.2 76,912 + HP15_p187g80 0.17 -0.2 76,930 + HP15_p187g80 0.18 +0.2 76,938 - HP15_p187g80 0.19 -0.5 76,938 - HP15_p187g80 0.19 +0.2 76,948 - HP15_p187g80 0.20 +0.2 76,980 + HP15_p187g80 0.22 -0.5 76,994 + HP15_p187g80 0.22 +0.0 77,028 + HP15_p187g80 0.25 -0.4 77,069 + HP15_p187g80 0.27 -0.2 77,075 + HP15_p187g80 0.27 +0.1 77,077 + HP15_p187g80 0.28 -0.6 77,083 - HP15_p187g80 0.28 +0.0 77,085 + HP15_p187g80 0.28 +0.5 77,090 - HP15_p187g80 0.28 -1.1 77,097 + HP15_p187g80 0.29 -0.5 77,114 + HP15_p187g80 0.30 +0.2 77,205 - HP15_p187g80 0.36 -1.3 77,242 - HP15_p187g80 0.38 -0.2 77,282 - HP15_p187g80 0.40 -0.0 77,298 + HP15_p187g80 0.41 -0.1 77,306 - HP15_p187g80 0.42 -0.3 77,308 + HP15_p187g80 0.42 -1.7 77,308 + HP15_p187g80 0.42 +0.1 77,316 - HP15_p187g80 0.43 +0.2 77,367 + HP15_p187g80 0.46 -1.1 77,367 + HP15_p187g80 0.46 -0.7 77,367 + HP15_p187g80 0.46 -0.1 77,367 + HP15_p187g80 0.46 +0.0 77,367 + HP15_p187g80 0.46 -0.0 77,376 - HP15_p187g80 0.46 -0.8 77,463 - HP15_p187g80 0.52 -2.2 77,463 - HP15_p187g80 0.52 -0.3 77,493 + HP15_p187g80 0.54 -0.0 77,493 + HP15_p187g80 0.54 -0.7 77,493 + HP15_p187g80 0.54 +0.6 77,493 - HP15_p187g80 0.54 +0.2 77,501 - HP15_p187g80 0.54 +1.2
Or see this region's nucleotide sequence