Strain Fitness in Marinobacter adhaerens HP15 around HP15_3806

Experiment: m.b. Tetracycline 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3804 and HP15_3805 are separated by 10 nucleotidesHP15_3805 and HP15_3806 are separated by 196 nucleotidesHP15_3806 and HP15_3807 overlap by 4 nucleotides HP15_3804: HP15_3804 - esterase, at 4,029,964 to 4,031,250 _3804 HP15_3805: HP15_3805 - conserved hypothetical protein, at 4,031,261 to 4,031,605 _3805 HP15_3806: HP15_3806 - conserved hypothetical protein, at 4,031,802 to 4,032,053 _3806 HP15_3807: HP15_3807 - conserved hypothetical protein, secreted, at 4,032,050 to 4,033,120 _3807 Position (kb) 4031 4032 4033Strain fitness (log2 ratio) -1 0 1at 4030.950 kb on - strand, within HP15_3804at 4031.019 kb on - strand, within HP15_3804at 4031.059 kb on - strand, within HP15_3804at 4031.091 kb on + strand, within HP15_3804at 4031.091 kb on + strand, within HP15_3804at 4031.116 kb on + strand, within HP15_3804at 4031.175 kb on + strandat 4031.259 kb on + strandat 4031.267 kb on - strandat 4031.268 kb on + strandat 4031.276 kb on - strandat 4031.286 kb on + strandat 4031.291 kb on + strandat 4031.303 kb on + strand, within HP15_3805at 4031.303 kb on + strand, within HP15_3805at 4031.352 kb on - strand, within HP15_3805at 4031.352 kb on - strand, within HP15_3805at 4031.379 kb on + strand, within HP15_3805at 4031.382 kb on - strand, within HP15_3805at 4031.393 kb on - strand, within HP15_3805at 4031.467 kb on + strand, within HP15_3805at 4031.467 kb on + strand, within HP15_3805at 4031.512 kb on + strand, within HP15_3805at 4031.654 kb on - strandat 4031.678 kb on - strandat 4032.022 kb on + strand, within HP15_3806at 4032.022 kb on + strand, within HP15_3806at 4032.088 kb on - strandat 4032.263 kb on + strand, within HP15_3807at 4032.293 kb on - strand, within HP15_3807at 4032.303 kb on - strand, within HP15_3807at 4032.358 kb on + strand, within HP15_3807at 4032.614 kb on - strand, within HP15_3807at 4032.653 kb on - strand, within HP15_3807at 4032.668 kb on - strand, within HP15_3807at 4032.812 kb on + strand, within HP15_3807at 4032.820 kb on - strand, within HP15_3807at 4032.820 kb on - strand, within HP15_3807at 4032.848 kb on + strand, within HP15_3807at 4032.928 kb on + strand, within HP15_3807at 4032.951 kb on + strand, within HP15_3807at 4033.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
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4,030,950 - HP15_3804 0.77 +0.3
4,031,019 - HP15_3804 0.82 -0.6
4,031,059 - HP15_3804 0.85 +0.4
4,031,091 + HP15_3804 0.88 +0.1
4,031,091 + HP15_3804 0.88 -0.3
4,031,116 + HP15_3804 0.90 +0.2
4,031,175 + -0.1
4,031,259 + +0.1
4,031,267 - +0.3
4,031,268 + -0.5
4,031,276 - -0.1
4,031,286 + -0.4
4,031,291 + -0.6
4,031,303 + HP15_3805 0.12 -0.1
4,031,303 + HP15_3805 0.12 +1.3
4,031,352 - HP15_3805 0.26 -0.4
4,031,352 - HP15_3805 0.26 +0.5
4,031,379 + HP15_3805 0.34 +0.2
4,031,382 - HP15_3805 0.35 +0.4
4,031,393 - HP15_3805 0.38 +0.4
4,031,467 + HP15_3805 0.60 +0.2
4,031,467 + HP15_3805 0.60 +0.2
4,031,512 + HP15_3805 0.73 +0.1
4,031,654 - -0.0
4,031,678 - -0.2
4,032,022 + HP15_3806 0.87 -0.4
4,032,022 + HP15_3806 0.87 -0.5
4,032,088 - -0.3
4,032,263 + HP15_3807 0.20 +0.3
4,032,293 - HP15_3807 0.23 +0.1
4,032,303 - HP15_3807 0.24 -0.1
4,032,358 + HP15_3807 0.29 -0.5
4,032,614 - HP15_3807 0.53 +0.3
4,032,653 - HP15_3807 0.56 -0.6
4,032,668 - HP15_3807 0.58 -0.3
4,032,812 + HP15_3807 0.71 +0.7
4,032,820 - HP15_3807 0.72 -0.4
4,032,820 - HP15_3807 0.72 +0.1
4,032,848 + HP15_3807 0.75 +0.2
4,032,928 + HP15_3807 0.82 -0.3
4,032,951 + HP15_3807 0.84 +0.4
4,033,048 - +0.9

Or see this region's nucleotide sequence