Strain Fitness in Marinobacter adhaerens HP15 around HP15_3689

Experiment: m.b. Tetracycline 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3687 and HP15_3688 are separated by 48 nucleotidesHP15_3688 and HP15_3689 are separated by 50 nucleotidesHP15_3689 and HP15_3690 are separated by 9 nucleotides HP15_3687: HP15_3687 - ParB family protein, at 3,885,861 to 3,886,748 _3687 HP15_3688: HP15_3688 - chromosome partitioning protein parA, at 3,886,797 to 3,887,591 _3688 HP15_3689: HP15_3689 - glucose-inhibited division protein B, at 3,887,642 to 3,888,286 _3689 HP15_3690: HP15_3690 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 3,888,296 to 3,890,182 _3690 Position (kb) 3887 3888 3889Strain fitness (log2 ratio) -3 -2 -1 0 1at 3886.711 kb on + strandat 3886.794 kb on + strandat 3887.605 kb on + strandat 3887.652 kb on + strandat 3887.724 kb on - strand, within HP15_3689at 3887.869 kb on + strand, within HP15_3689at 3887.886 kb on + strand, within HP15_3689at 3887.886 kb on + strand, within HP15_3689at 3887.906 kb on + strand, within HP15_3689at 3887.906 kb on + strand, within HP15_3689at 3887.940 kb on - strand, within HP15_3689at 3888.104 kb on + strand, within HP15_3689at 3888.142 kb on + strand, within HP15_3689at 3888.147 kb on + strand, within HP15_3689at 3888.155 kb on - strand, within HP15_3689at 3888.155 kb on - strand, within HP15_3689at 3888.155 kb on - strand, within HP15_3689

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
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3,886,711 + -1.3
3,886,794 + +0.3
3,887,605 + -2.8
3,887,652 + +0.8
3,887,724 - HP15_3689 0.13 -0.3
3,887,869 + HP15_3689 0.35 +1.0
3,887,886 + HP15_3689 0.38 -1.0
3,887,886 + HP15_3689 0.38 -0.9
3,887,906 + HP15_3689 0.41 -1.0
3,887,906 + HP15_3689 0.41 -1.2
3,887,940 - HP15_3689 0.46 +0.1
3,888,104 + HP15_3689 0.72 +0.1
3,888,142 + HP15_3689 0.78 -0.5
3,888,147 + HP15_3689 0.78 +0.2
3,888,155 - HP15_3689 0.80 -0.1
3,888,155 - HP15_3689 0.80 -0.5
3,888,155 - HP15_3689 0.80 -0.5

Or see this region's nucleotide sequence