Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3640 and HP15_3641 are separated by 353 nucleotides HP15_3641 and HP15_3642 are separated by 97 nucleotides HP15_3642 and HP15_3643 are separated by 263 nucleotides
HP15_3640: HP15_3640 - conserved hypothetical protein, RES superfamily, at 3,834,766 to 3,835,290
_3640
HP15_3641: HP15_3641 - hypothetical protein, at 3,835,644 to 3,835,847
_3641
HP15_3642: HP15_3642 - hypothetical protein, at 3,835,945 to 3,836,061
_3642
HP15_3643: HP15_3643 - restriction endonuclease, at 3,836,325 to 3,836,990
_3643
Position (kb)
3835
3836 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3834.740 kb on - strand at 3834.765 kb on - strand at 3834.775 kb on + strand at 3834.812 kb on - strand at 3834.847 kb on + strand, within HP15_3640 at 3835.027 kb on - strand, within HP15_3640 at 3835.174 kb on + strand, within HP15_3640 at 3835.256 kb on + strand at 3835.263 kb on + strand at 3835.286 kb on - strand at 3835.291 kb on + strand at 3835.315 kb on + strand at 3835.326 kb on + strand at 3835.341 kb on + strand at 3835.408 kb on + strand at 3835.414 kb on + strand at 3835.470 kb on - strand at 3835.522 kb on + strand at 3835.539 kb on - strand at 3835.551 kb on + strand at 3835.581 kb on + strand at 3835.589 kb on - strand at 3835.603 kb on - strand at 3835.605 kb on + strand at 3835.613 kb on - strand at 3835.721 kb on + strand, within HP15_3641 at 3835.739 kb on - strand, within HP15_3641 at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.867 kb on + strand at 3835.869 kb on - strand at 3835.869 kb on - strand at 3835.936 kb on + strand at 3835.944 kb on - strand at 3835.982 kb on + strand, within HP15_3642 at 3836.052 kb on + strand at 3836.052 kb on + strand at 3836.100 kb on - strand at 3836.132 kb on + strand at 3836.134 kb on + strand at 3836.140 kb on - strand at 3836.320 kb on - strand at 3836.342 kb on + strand at 3836.358 kb on - strand at 3836.461 kb on - strand, within HP15_3643 at 3836.461 kb on - strand, within HP15_3643 at 3836.496 kb on - strand, within HP15_3643 at 3836.499 kb on + strand, within HP15_3643 at 3836.517 kb on - strand, within HP15_3643 at 3836.532 kb on - strand, within HP15_3643 at 3836.617 kb on + strand, within HP15_3643 at 3836.617 kb on + strand, within HP15_3643 at 3836.623 kb on - strand, within HP15_3643 at 3836.625 kb on - strand, within HP15_3643 at 3836.625 kb on - strand, within HP15_3643 at 3836.672 kb on - strand, within HP15_3643 at 3836.704 kb on + strand, within HP15_3643 at 3836.704 kb on + strand, within HP15_3643 at 3836.712 kb on - strand, within HP15_3643 at 3836.712 kb on - strand, within HP15_3643 at 3836.712 kb on - strand, within HP15_3643 at 3836.712 kb on - strand, within HP15_3643 at 3836.722 kb on - strand, within HP15_3643 at 3836.829 kb on - strand, within HP15_3643
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 3,834,740 - +0.3 3,834,765 - +0.0 3,834,775 + +0.6 3,834,812 - -0.3 3,834,847 + HP15_3640 0.15 -0.2 3,835,027 - HP15_3640 0.50 -0.2 3,835,174 + HP15_3640 0.78 -0.1 3,835,256 + +0.2 3,835,263 + -0.9 3,835,286 - -0.2 3,835,291 + -0.0 3,835,315 + -0.0 3,835,326 + -0.3 3,835,341 + -1.5 3,835,408 + -0.4 3,835,414 + -0.1 3,835,470 - -0.1 3,835,522 + +0.1 3,835,539 - -0.2 3,835,551 + -0.2 3,835,581 + +1.0 3,835,589 - -0.7 3,835,603 - +0.2 3,835,605 + +0.1 3,835,613 - +0.0 3,835,721 + HP15_3641 0.38 -0.3 3,835,739 - HP15_3641 0.47 -0.6 3,835,861 + +0.2 3,835,861 + +1.0 3,835,861 + +0.1 3,835,861 + -1.9 3,835,867 + +0.1 3,835,869 - +0.2 3,835,869 - -0.3 3,835,936 + -0.8 3,835,944 - -0.2 3,835,982 + HP15_3642 0.32 +0.0 3,836,052 + -0.2 3,836,052 + +0.0 3,836,100 - +0.3 3,836,132 + +0.3 3,836,134 + -0.4 3,836,140 - -0.1 3,836,320 - -0.3 3,836,342 + -0.2 3,836,358 - -0.2 3,836,461 - HP15_3643 0.20 +0.8 3,836,461 - HP15_3643 0.20 +0.0 3,836,496 - HP15_3643 0.26 +0.0 3,836,499 + HP15_3643 0.26 +1.8 3,836,517 - HP15_3643 0.29 -0.1 3,836,532 - HP15_3643 0.31 -0.3 3,836,617 + HP15_3643 0.44 -0.3 3,836,617 + HP15_3643 0.44 +0.1 3,836,623 - HP15_3643 0.45 +0.1 3,836,625 - HP15_3643 0.45 -0.1 3,836,625 - HP15_3643 0.45 +0.1 3,836,672 - HP15_3643 0.52 +0.1 3,836,704 + HP15_3643 0.57 +0.2 3,836,704 + HP15_3643 0.57 -0.3 3,836,712 - HP15_3643 0.58 -0.3 3,836,712 - HP15_3643 0.58 +0.4 3,836,712 - HP15_3643 0.58 +0.4 3,836,712 - HP15_3643 0.58 -0.9 3,836,722 - HP15_3643 0.60 -0.1 3,836,829 - HP15_3643 0.76 +0.3
Or see this region's nucleotide sequence