Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00690 and PGA1_262p00700 are separated by 1 nucleotides PGA1_262p00700 and PGA1_262p00710 overlap by 4 nucleotides PGA1_262p00710 and PGA1_262p00720 overlap by 4 nucleotides PGA1_262p00720 and PGA1_262p00730 are separated by 73 nucleotides
PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373
_262p00690
PGA1_262p00700: PGA1_262p00700 - stressosome protein rsbS-like protein, at 80,375 to 80,737
_262p00700
PGA1_262p00710: PGA1_262p00710 - serine/threonine-protein kinase RsbT-like protein, at 80,734 to 81,141
_262p00710
PGA1_262p00720: PGA1_262p00720 - serine/threonine-protein kinase RsbT-like protein, at 81,138 to 82,151
_262p00720
PGA1_262p00730: PGA1_262p00730 - putative signal transduction histidine kinase, at 82,225 to 83,316
_262p00730
Position (kb) 81
82
83 Strain fitness (log2 ratio) -1
0
1
2 at 80.239 kb on - strand, within PGA1_262p00690 at 80.334 kb on - strand at 80.350 kb on - strand at 80.600 kb on + strand, within PGA1_262p00700 at 80.600 kb on + strand, within PGA1_262p00700 at 80.674 kb on + strand, within PGA1_262p00700 at 80.957 kb on + strand, within PGA1_262p00710 at 80.959 kb on + strand, within PGA1_262p00710 at 81.138 kb on - strand at 81.155 kb on - strand at 81.238 kb on - strand at 81.376 kb on + strand, within PGA1_262p00720 at 81.437 kb on + strand, within PGA1_262p00720 at 81.497 kb on + strand, within PGA1_262p00720 at 81.586 kb on - strand, within PGA1_262p00720 at 81.639 kb on + strand, within PGA1_262p00720 at 81.657 kb on - strand, within PGA1_262p00720 at 81.732 kb on - strand, within PGA1_262p00720 at 81.822 kb on - strand, within PGA1_262p00720 at 82.465 kb on - strand, within PGA1_262p00730 at 83.008 kb on + strand, within PGA1_262p00730 at 83.057 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 80,239 - PGA1_262p00690 0.85 +0.7 80,334 - -0.6 80,350 - +0.5 80,600 + PGA1_262p00700 0.62 -0.1 80,600 + PGA1_262p00700 0.62 -0.3 80,674 + PGA1_262p00700 0.82 +0.3 80,957 + PGA1_262p00710 0.55 -0.7 80,959 + PGA1_262p00710 0.55 +0.7 81,138 - +0.3 81,155 - -0.5 81,238 - +0.7 81,376 + PGA1_262p00720 0.23 +0.7 81,437 + PGA1_262p00720 0.29 -0.2 81,497 + PGA1_262p00720 0.35 +1.3 81,586 - PGA1_262p00720 0.44 -1.5 81,639 + PGA1_262p00720 0.49 +1.9 81,657 - PGA1_262p00720 0.51 +0.4 81,732 - PGA1_262p00720 0.59 -0.7 81,822 - PGA1_262p00720 0.67 +1.4 82,465 - PGA1_262p00730 0.22 +0.1 83,008 + PGA1_262p00730 0.72 -0.6 83,057 + PGA1_262p00730 0.76 +0.0 83,066 + PGA1_262p00730 0.77 +0.7 83,066 + PGA1_262p00730 0.77 -0.5
Or see this region's nucleotide sequence