Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00020 and PGA1_262p00030 are separated by 438 nucleotides PGA1_262p00030 and PGA1_262p00040 are separated by 34 nucleotides
PGA1_262p00020: PGA1_262p00020 - plamid partition protein-like protein, at 1,402 to 2,544
_262p00020
PGA1_262p00030: PGA1_262p00030 - Glycosyl hydrolases family 16./Hemolysin-type calcium-binding repeat (2 copies)., at 2,983 to 4,281
_262p00030
PGA1_262p00040: PGA1_262p00040 - sulfotransferase-like protein, at 4,316 to 5,230
_262p00040
Position (kb) 2
3
4
5 Strain fitness (log2 ratio) -2
-1
0
1 at 2.652 kb on - strand at 2.806 kb on - strand at 2.843 kb on - strand at 2.845 kb on + strand at 2.853 kb on - strand at 2.853 kb on - strand at 2.857 kb on + strand at 2.857 kb on + strand at 2.857 kb on + strand at 2.934 kb on + strand at 2.935 kb on - strand at 2.942 kb on - strand at 2.942 kb on - strand at 2.974 kb on - strand at 2.974 kb on - strand at 2.974 kb on - strand at 3.031 kb on - strand at 3.127 kb on + strand, within PGA1_262p00030 at 3.237 kb on - strand, within PGA1_262p00030 at 3.361 kb on + strand, within PGA1_262p00030 at 3.609 kb on - strand, within PGA1_262p00030 at 3.618 kb on + strand, within PGA1_262p00030 at 3.659 kb on + strand, within PGA1_262p00030 at 3.802 kb on + strand, within PGA1_262p00030 at 4.082 kb on - strand, within PGA1_262p00030 at 4.232 kb on - strand at 4.234 kb on - strand at 4.387 kb on + strand at 4.449 kb on - strand, within PGA1_262p00040 at 4.626 kb on + strand, within PGA1_262p00040 at 4.634 kb on - strand, within PGA1_262p00040 at 4.643 kb on + strand, within PGA1_262p00040 at 4.682 kb on + strand, within PGA1_262p00040 at 4.764 kb on + strand, within PGA1_262p00040 at 4.788 kb on - strand, within PGA1_262p00040 at 4.905 kb on + strand, within PGA1_262p00040 at 4.983 kb on - strand, within PGA1_262p00040 at 5.019 kb on + strand, within PGA1_262p00040 at 5.101 kb on + strand, within PGA1_262p00040 at 5.172 kb on + strand at 5.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 2,652 - -0.1 2,806 - +0.9 2,843 - +0.8 2,845 + -0.0 2,853 - -2.1 2,853 - +0.7 2,857 + +0.1 2,857 + -1.1 2,857 + -1.0 2,934 + +0.0 2,935 - +0.2 2,942 - +0.6 2,942 - -0.1 2,974 - +0.5 2,974 - +0.3 2,974 - +0.6 3,031 - -0.9 3,127 + PGA1_262p00030 0.11 +0.4 3,237 - PGA1_262p00030 0.20 +0.4 3,361 + PGA1_262p00030 0.29 +1.4 3,609 - PGA1_262p00030 0.48 +0.1 3,618 + PGA1_262p00030 0.49 +0.4 3,659 + PGA1_262p00030 0.52 +0.4 3,802 + PGA1_262p00030 0.63 +0.0 4,082 - PGA1_262p00030 0.85 +0.4 4,232 - +1.2 4,234 - +0.4 4,387 + +0.5 4,449 - PGA1_262p00040 0.15 +0.2 4,626 + PGA1_262p00040 0.34 +0.1 4,634 - PGA1_262p00040 0.35 +0.0 4,643 + PGA1_262p00040 0.36 +0.2 4,682 + PGA1_262p00040 0.40 -1.0 4,764 + PGA1_262p00040 0.49 +1.0 4,788 - PGA1_262p00040 0.52 -1.0 4,905 + PGA1_262p00040 0.64 -0.5 4,983 - PGA1_262p00040 0.73 -0.3 5,019 + PGA1_262p00040 0.77 +0.4 5,101 + PGA1_262p00040 0.86 -1.0 5,172 + -0.5 5,237 + +0.1
Or see this region's nucleotide sequence