Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3455 and HP15_3456 are separated by 100 nucleotides HP15_3456 and HP15_3457 are separated by 115 nucleotides
HP15_3455: HP15_3455 - glycerophosphoryl diester phosphodiesterase family protein, at 3,636,097 to 3,637,371
_3455
HP15_3456: HP15_3456 - protein containing DUF465, at 3,637,472 to 3,637,729
_3456
HP15_3457: HP15_3457 - ATP dependent DNA ligase, at 3,637,845 to 3,638,699
_3457
Position (kb)
3637
3638 Strain fitness (log2 ratio)
-1
0
1 at 3636.481 kb on - strand, within HP15_3455 at 3636.482 kb on - strand, within HP15_3455 at 3636.483 kb on + strand, within HP15_3455 at 3636.527 kb on + strand, within HP15_3455 at 3636.535 kb on - strand, within HP15_3455 at 3636.557 kb on - strand, within HP15_3455 at 3636.557 kb on - strand, within HP15_3455 at 3636.571 kb on - strand, within HP15_3455 at 3636.579 kb on + strand, within HP15_3455 at 3636.638 kb on - strand, within HP15_3455 at 3636.704 kb on + strand, within HP15_3455 at 3636.704 kb on + strand, within HP15_3455 at 3636.722 kb on - strand, within HP15_3455 at 3636.755 kb on + strand, within HP15_3455 at 3636.763 kb on - strand, within HP15_3455 at 3636.774 kb on + strand, within HP15_3455 at 3636.782 kb on - strand, within HP15_3455 at 3636.813 kb on + strand, within HP15_3455 at 3636.821 kb on - strand, within HP15_3455 at 3636.944 kb on - strand, within HP15_3455 at 3637.111 kb on + strand, within HP15_3455 at 3637.119 kb on - strand, within HP15_3455 at 3637.307 kb on + strand at 3637.329 kb on + strand at 3637.334 kb on + strand at 3637.572 kb on - strand, within HP15_3456 at 3637.737 kb on + strand at 3637.739 kb on + strand at 3637.739 kb on + strand at 3637.739 kb on + strand at 3637.745 kb on - strand at 3637.747 kb on - strand at 3637.747 kb on - strand at 3637.783 kb on - strand at 3637.794 kb on - strand at 3637.804 kb on + strand at 3637.804 kb on + strand at 3637.812 kb on - strand at 3637.812 kb on - strand at 3637.990 kb on + strand, within HP15_3457 at 3638.034 kb on + strand, within HP15_3457 at 3638.034 kb on + strand, within HP15_3457 at 3638.120 kb on - strand, within HP15_3457 at 3638.142 kb on - strand, within HP15_3457 at 3638.163 kb on + strand, within HP15_3457 at 3638.199 kb on - strand, within HP15_3457 at 3638.213 kb on - strand, within HP15_3457 at 3638.237 kb on + strand, within HP15_3457 at 3638.303 kb on - strand, within HP15_3457 at 3638.360 kb on + strand, within HP15_3457 at 3638.383 kb on + strand, within HP15_3457 at 3638.428 kb on + strand, within HP15_3457 at 3638.428 kb on + strand, within HP15_3457 at 3638.545 kb on + strand, within HP15_3457 at 3638.670 kb on - strand at 3638.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 3,636,481 - HP15_3455 0.30 +0.1 3,636,482 - HP15_3455 0.30 +0.7 3,636,483 + HP15_3455 0.30 +0.2 3,636,527 + HP15_3455 0.34 +0.0 3,636,535 - HP15_3455 0.34 +0.4 3,636,557 - HP15_3455 0.36 +0.8 3,636,557 - HP15_3455 0.36 +1.3 3,636,571 - HP15_3455 0.37 +0.2 3,636,579 + HP15_3455 0.38 +0.5 3,636,638 - HP15_3455 0.42 -0.3 3,636,704 + HP15_3455 0.48 +0.1 3,636,704 + HP15_3455 0.48 +0.8 3,636,722 - HP15_3455 0.49 -0.0 3,636,755 + HP15_3455 0.52 +0.4 3,636,763 - HP15_3455 0.52 +0.3 3,636,774 + HP15_3455 0.53 +0.7 3,636,782 - HP15_3455 0.54 +0.7 3,636,813 + HP15_3455 0.56 -0.1 3,636,821 - HP15_3455 0.57 -1.0 3,636,944 - HP15_3455 0.66 -0.3 3,637,111 + HP15_3455 0.80 +0.0 3,637,119 - HP15_3455 0.80 +1.4 3,637,307 + +0.0 3,637,329 + +0.9 3,637,334 + -0.1 3,637,572 - HP15_3456 0.39 -0.9 3,637,737 + +0.1 3,637,739 + +0.7 3,637,739 + +0.6 3,637,739 + +0.1 3,637,745 - +0.1 3,637,747 - -0.5 3,637,747 - +0.4 3,637,783 - -0.3 3,637,794 - +0.2 3,637,804 + -0.4 3,637,804 + -0.6 3,637,812 - +0.2 3,637,812 - -0.3 3,637,990 + HP15_3457 0.17 -0.2 3,638,034 + HP15_3457 0.22 -0.2 3,638,034 + HP15_3457 0.22 -0.8 3,638,120 - HP15_3457 0.32 +0.3 3,638,142 - HP15_3457 0.35 -0.6 3,638,163 + HP15_3457 0.37 +0.2 3,638,199 - HP15_3457 0.41 +0.4 3,638,213 - HP15_3457 0.43 -0.4 3,638,237 + HP15_3457 0.46 +0.2 3,638,303 - HP15_3457 0.54 +0.0 3,638,360 + HP15_3457 0.60 +0.1 3,638,383 + HP15_3457 0.63 +0.5 3,638,428 + HP15_3457 0.68 -0.3 3,638,428 + HP15_3457 0.68 -0.1 3,638,545 + HP15_3457 0.82 +0.5 3,638,670 - -0.2 3,638,720 - -0.1
Or see this region's nucleotide sequence