Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34880

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
3,659,310	+		PGA1_c34860	0.59	-0.0
3,659,325	-		PGA1_c34860	0.61	-0.4
3,659,377	+		PGA1_c34860	0.66	-0.3
3,659,412	+		PGA1_c34860	0.69	-1.5
3,659,432	+		PGA1_c34860	0.71	-0.1
3,659,441	-		PGA1_c34860	0.72	-0.1
3,659,481	-		PGA1_c34860	0.76	+0.2
3,659,482	+		PGA1_c34860	0.76	+0.8
3,659,490	-		PGA1_c34860	0.77	-1.2
3,659,534	-		PGA1_c34860	0.82	+0.2
3,659,616	-		PGA1_c34860	0.90	-0.3
3,659,623	+				-0.4
3,659,631	-				+0.6
3,659,631	-				-0.7
3,659,654	-				-0.3
3,659,686	-				+0.0
3,659,691	-				+0.2
3,659,721	-				-0.7
3,659,721	-				-0.2
3,659,724	+				+0.6
3,659,752	+				-0.6
3,659,756	+				-0.5
3,659,794	-				+0.1
3,659,794	-				-0.9
3,659,799	-				-0.3
3,659,896	+		PGA1_c34870	0.22	+0.1
3,659,899	+		PGA1_c34870	0.23	+0.9
3,659,912	-		PGA1_c34870	0.26	-1.3
3,659,927	+		PGA1_c34870	0.29	+1.1
3,659,941	+		PGA1_c34870	0.32	-1.2
3,659,941	+		PGA1_c34870	0.32	-0.1
3,659,978	-		PGA1_c34870	0.40	+0.5
3,659,985	-		PGA1_c34870	0.42	+0.7
3,660,021	+		PGA1_c34870	0.50	-1.8
3,660,061	+		PGA1_c34870	0.58	+0.9
3,660,076	-		PGA1_c34870	0.62	+0.2
3,660,076	-		PGA1_c34870	0.62	-0.6
3,660,086	-		PGA1_c34870	0.64	+0.5
3,660,086	-		PGA1_c34870	0.64	-1.5
3,660,092	+		PGA1_c34870	0.65	+1.2
3,660,114	+		PGA1_c34870	0.70	-0.8
3,660,114	+		PGA1_c34870	0.70	-0.5
3,660,122	-		PGA1_c34870	0.72	-0.6
3,660,153	+		PGA1_c34870	0.79	-0.2
3,660,153	+		PGA1_c34870	0.79	-0.8
3,660,153	+		PGA1_c34870	0.79	-0.8
3,660,153	+		PGA1_c34870	0.79	+0.1
3,660,153	+		PGA1_c34870	0.79	+0.4
3,660,153	+		PGA1_c34870	0.79	-0.3
3,660,217	+				-1.2
3,660,217	+				+0.7
3,660,237	+				-1.0
3,660,237	+				+1.3
3,660,237	+				-1.4
3,660,242	+				+0.9
3,660,242	+				+0.2
3,660,242	+				+0.1
3,660,242	+				+0.0
3,660,245	-				+0.3
3,660,245	-				-0.2
3,660,245	-				-0.7
3,660,245	-				+1.9
3,660,245	-				-0.2
3,660,245	-				+0.4
3,660,245	-				-0.6
3,660,250	-				+0.6
3,660,250	-				-0.1
3,660,326	-				+0.1
3,660,332	-				+0.4
3,660,347	+				+0.8
3,660,362	+				+0.9
3,660,362	+				+0.5
3,660,370	-				+1.5
3,660,370	-				+0.7
3,660,370	-				+1.2
3,660,370	-				+0.3
3,660,370	-				+0.5
3,660,372	+				+0.3
3,660,380	-				+1.0
3,660,417	+				+1.4
3,660,420	-				+1.7
3,660,420	-				-0.6
3,660,420	-				+0.9
3,660,420	-				+0.5
3,660,492	+		PGA1_c34880	0.15	+0.8
3,660,492	+		PGA1_c34880	0.15	-0.4
3,660,492	+		PGA1_c34880	0.15	+1.4
3,660,492	+		PGA1_c34880	0.15	+2.2
3,660,492	+		PGA1_c34880	0.15	+0.5
3,660,500	-		PGA1_c34880	0.16	+0.7
3,660,500	-		PGA1_c34880	0.16	+0.9
3,660,500	-		PGA1_c34880	0.16	-0.7
3,660,500	-		PGA1_c34880	0.16	+1.0
3,660,500	-		PGA1_c34880	0.16	+1.7
3,660,514	-		PGA1_c34880	0.17	+0.6
3,660,514	-		PGA1_c34880	0.17	+0.3
3,660,521	+		PGA1_c34880	0.17	+0.8
3,660,566	+		PGA1_c34880	0.21	+0.2
3,660,570	+		PGA1_c34880	0.21	+0.3
3,660,582	+		PGA1_c34880	0.22	+1.9
3,660,643	+		PGA1_c34880	0.27	+2.2
3,660,651	-		PGA1_c34880	0.28	+1.5
3,660,651	-		PGA1_c34880	0.28	+0.2
3,660,664	+		PGA1_c34880	0.29	+1.1
3,660,664	+		PGA1_c34880	0.29	+0.1
3,660,674	+		PGA1_c34880	0.29	+1.3
3,660,674	+		PGA1_c34880	0.29	+1.3
3,660,679	+		PGA1_c34880	0.30	+1.0
3,660,682	-		PGA1_c34880	0.30	+1.2
3,660,758	+		PGA1_c34880	0.36	+0.8
3,660,766	-		PGA1_c34880	0.37	+0.1
3,660,785	+		PGA1_c34880	0.38	+1.4
3,660,791	-		PGA1_c34880	0.39	-0.1
3,660,793	-		PGA1_c34880	0.39	+1.3
3,660,802	-		PGA1_c34880	0.39	+1.2
3,660,943	-		PGA1_c34880	0.50	+0.4
3,660,944	+		PGA1_c34880	0.51	-0.7
3,660,959	+		PGA1_c34880	0.52	+0.3
3,660,967	-		PGA1_c34880	0.52	+1.1
3,660,977	+		PGA1_c34880	0.53	+1.8
3,660,985	-		PGA1_c34880	0.54	+0.9
3,660,990	+		PGA1_c34880	0.54	+0.7
3,660,990	+		PGA1_c34880	0.54	+0.7
3,660,998	-		PGA1_c34880	0.55	+0.3
3,660,998	-		PGA1_c34880	0.55	+1.3
3,660,998	-		PGA1_c34880	0.55	+1.4
3,660,998	-		PGA1_c34880	0.55	-0.5
3,661,029	-		PGA1_c34880	0.57	+0.5
3,661,031	-		PGA1_c34880	0.57	+1.2
3,661,101	+		PGA1_c34880	0.63	+0.5
3,661,101	+		PGA1_c34880	0.63	+0.6
3,661,109	-		PGA1_c34880	0.64	+0.7
3,661,109	-		PGA1_c34880	0.64	+0.7
3,661,109	-		PGA1_c34880	0.64	+0.7
3,661,109	-		PGA1_c34880	0.64	+2.1
3,661,111	+		PGA1_c34880	0.64	+2.1
3,661,116	+		PGA1_c34880	0.64	+1.1
3,661,119	-		PGA1_c34880	0.64	+0.5
3,661,149	+		PGA1_c34880	0.67	+0.0
3,661,194	+		PGA1_c34880	0.70	-0.2
3,661,216	-		PGA1_c34880	0.72	-0.2
3,661,232	+		PGA1_c34880	0.73	+0.8
3,661,236	+		PGA1_c34880	0.74	-0.0
3,661,236	+		PGA1_c34880	0.74	+0.8
3,661,236	+		PGA1_c34880	0.74	+0.2
3,661,238	+		PGA1_c34880	0.74	-0.0
3,661,240	-		PGA1_c34880	0.74	+0.1
3,661,244	-		PGA1_c34880	0.74	+1.5
3,661,246	-		PGA1_c34880	0.74	+1.3
3,661,248	+		PGA1_c34880	0.74	+2.6
3,661,251	-		PGA1_c34880	0.75	+1.1
3,661,261	+		PGA1_c34880	0.75	+1.9
3,661,270	+		PGA1_c34880	0.76	+0.2
3,661,278	-		PGA1_c34880	0.77	+1.0
3,661,328	+		PGA1_c34880	0.81	+1.0
3,661,335	+		PGA1_c34880	0.81	+1.1
3,661,335	+		PGA1_c34880	0.81	+1.4
3,661,343	-		PGA1_c34880	0.82	+0.2
3,661,343	-		PGA1_c34880	0.82	+0.8
3,661,343	-		PGA1_c34880	0.82	-0.3
3,661,343	-		PGA1_c34880	0.82	+1.8
3,661,343	-		PGA1_c34880	0.82	+1.5
3,661,343	-		PGA1_c34880	0.82	+1.1
3,661,351	-		PGA1_c34880	0.83	+0.9
3,661,356	+		PGA1_c34880	0.83	+0.4
3,661,405	+		PGA1_c34880	0.87	+0.9
3,661,410	-		PGA1_c34880	0.87	+1.3
3,661,415	+		PGA1_c34880	0.88	-0.1
3,661,423	-		PGA1_c34880	0.88	+2.6
3,661,492	+				+1.7
3,661,504	+				+1.5
3,661,504	-				+1.2
3,661,506	+				+1.3
3,661,512	-				+0.9
3,661,512	-				+1.4
3,661,514	-				+1.2
3,661,514	-				+1.6
3,661,517	-				-0.4
3,661,517	-				-0.2
3,661,529	+				+0.9
3,661,536	+				+1.7
3,661,581	-				+0.7
3,661,603	-				+1.2
3,661,613	-				+0.7
3,661,613	-				-0.2
3,661,621	+				-0.4
3,661,654	-				+0.1
3,661,667	+				-1.1
3,661,667	+				+1.0
3,661,667	+				-0.2
3,661,667	+				-0.1
3,661,667	+				+0.3
3,661,667	+				-1.1
3,661,667	+				-0.4
3,661,675	-				+0.5
3,661,675	-				-0.2
3,661,684	-				+0.7
3,661,756	+				+0.4
3,661,768	-				+0.1
3,661,788	+		PGA1_c34890	0.12	+0.5
3,661,788	+		PGA1_c34890	0.12	+0.7
3,661,788	+		PGA1_c34890	0.12	+1.2
3,661,793	+		PGA1_c34890	0.13	+1.0
3,661,794	-		PGA1_c34890	0.14	-0.7
3,661,796	-		PGA1_c34890	0.14	+0.1
3,661,801	-		PGA1_c34890	0.16	+0.9
3,661,803	-		PGA1_c34890	0.16	+0.3
3,661,805	+		PGA1_c34890	0.17	+1.2
3,661,806	+		PGA1_c34890	0.17	+0.9
3,661,808	-		PGA1_c34890	0.18	+0.6
3,661,813	-		PGA1_c34890	0.19	+1.7
3,661,814	-		PGA1_c34890	0.20	+1.3
3,661,836	+		PGA1_c34890	0.27	+0.7
3,661,836	+		PGA1_c34890	0.27	+0.2
3,661,836	+		PGA1_c34890	0.27	+0.6
3,661,836	+		PGA1_c34890	0.27	+0.3
3,661,836	+		PGA1_c34890	0.27	-0.0
3,661,836	+		PGA1_c34890	0.27	+0.7
3,661,836	+		PGA1_c34890	0.27	+1.6
3,661,836	+		PGA1_c34890	0.27	+0.4
3,661,844	-		PGA1_c34890	0.29	+0.4
3,661,844	-		PGA1_c34890	0.29	-0.3
3,661,844	-		PGA1_c34890	0.29	-0.1
3,661,844	-		PGA1_c34890	0.29	+2.1
3,661,845	-		PGA1_c34890	0.29	+0.3
3,661,852	-		PGA1_c34890	0.31	+0.9
3,661,860	+		PGA1_c34890	0.34	+0.1
3,661,880	+		PGA1_c34890	0.40	+0.4
3,661,880	+		PGA1_c34890	0.40	-0.4
3,661,880	+		PGA1_c34890	0.40	+0.6
3,661,880	+		PGA1_c34890	0.40	+0.6
3,661,880	+		PGA1_c34890	0.40	+0.1
3,661,888	-		PGA1_c34890	0.43	+0.5
3,661,888	-		PGA1_c34890	0.43	-0.1
3,661,888	-		PGA1_c34890	0.43	+1.0
3,661,888	-		PGA1_c34890	0.43	+1.6
3,661,888	-		PGA1_c34890	0.43	+0.1
3,661,888	-		PGA1_c34890	0.43	+1.0
3,661,888	-		PGA1_c34890	0.43	-0.1
3,661,890	+		PGA1_c34890	0.43	+1.1
3,661,924	-		PGA1_c34890	0.54	+0.5
3,661,924	-		PGA1_c34890	0.54	+1.0
3,661,960	+		PGA1_c34890	0.65	-0.2
3,661,968	-		PGA1_c34890	0.67	-0.6
3,661,968	-		PGA1_c34890	0.67	+1.7
3,661,968	-		PGA1_c34890	0.67	-0.0
3,661,970	+		PGA1_c34890	0.68	+0.7
3,661,975	+		PGA1_c34890	0.69	+0.1
3,661,975	+		PGA1_c34890	0.69	+0.4
3,661,975	+		PGA1_c34890	0.69	+1.1
3,661,986	+		PGA1_c34890	0.73	+0.6
3,661,986	+		PGA1_c34890	0.73	-0.3
3,661,993	+		PGA1_c34890	0.75	+0.7
3,661,995	+		PGA1_c34890	0.76	+0.9
3,662,043	+				-0.3
3,662,070	-				+0.6
3,662,075	-				+1.3
3,662,075	-				+0.5
3,662,075	-				+0.6
3,662,075	-				+1.1
3,662,075	-				+0.1
3,662,098	-				+0.1
3,662,100	+				-0.1
3,662,100	+				+0.6
3,662,100	+				-1.2
3,662,128	+				-0.1
3,662,161	+				-1.0
3,662,198	+				-1.3
3,662,221	-		PGA1_c34900	0.11	+0.3
3,662,222	-		PGA1_c34900	0.11	+0.0
3,662,258	+		PGA1_c34900	0.14	-0.7
3,662,258	+		PGA1_c34900	0.14	-0.5
3,662,263	+		PGA1_c34900	0.14	+1.1
3,662,265	+		PGA1_c34900	0.15	-1.7
3,662,266	-		PGA1_c34900	0.15	-0.0
3,662,266	-		PGA1_c34900	0.15	+0.6
3,662,266	-		PGA1_c34900	0.15	+0.5
3,662,266	-		PGA1_c34900	0.15	+0.2
3,662,266	-		PGA1_c34900	0.15	-0.6
3,662,328	-		PGA1_c34900	0.20	-0.1
3,662,333	-		PGA1_c34900	0.20	+0.5
3,662,348	+		PGA1_c34900	0.21	-0.0
3,662,348	+		PGA1_c34900	0.21	+0.7
3,662,348	+		PGA1_c34900	0.21	+0.5
3,662,354	-		PGA1_c34900	0.22	-0.1
3,662,356	-		PGA1_c34900	0.22	-0.5
3,662,356	-		PGA1_c34900	0.22	-1.3
3,662,356	-		PGA1_c34900	0.22	+0.1
3,662,356	-		PGA1_c34900	0.22	+0.6
3,662,356	-		PGA1_c34900	0.22	+0.6
3,662,356	-		PGA1_c34900	0.22	+1.5
3,662,356	-		PGA1_c34900	0.22	+0.5
3,662,419	+		PGA1_c34900	0.27	+1.3
3,662,419	+		PGA1_c34900	0.27	-0.0
3,662,427	-		PGA1_c34900	0.28	+0.2
3,662,427	-		PGA1_c34900	0.28	+0.2
3,662,494	+		PGA1_c34900	0.33	-1.2
3,662,502	-		PGA1_c34900	0.34	-0.6
3,662,536	+		PGA1_c34900	0.37	-0.0
3,662,544	-		PGA1_c34900	0.37	-0.4
3,662,544	-		PGA1_c34900	0.37	+0.9
3,662,560	-		PGA1_c34900	0.39	+0.7