Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3258 and HP15_3259 are separated by 114 nucleotides HP15_3259 and HP15_3260 are separated by 2 nucleotides HP15_3260 and HP15_3261 are separated by 226 nucleotides
HP15_3257: HP15_3257 - hypothetical protein, at 3,412,606 to 3,412,719
_3257
HP15_3258: HP15_3258 - hypothetical protein, at 3,412,694 to 3,412,804
_3258
HP15_3259: HP15_3259 - NolW domain protein, at 3,412,919 to 3,413,707
_3259
HP15_3260: HP15_3260 - heat shock protein DnaJ domain protein, at 3,413,710 to 3,414,216
_3260
HP15_3261: HP15_3261 - efflux transporter, RND family, MFP subunit, at 3,414,443 to 3,415,543
_3261
Position (kb)
3413
3414
3415 Strain fitness (log2 ratio)
-2
-1
0
1 at 3412.898 kb on + strand at 3412.906 kb on - strand at 3412.944 kb on - strand at 3412.963 kb on - strand at 3412.999 kb on - strand, within HP15_3259 at 3413.054 kb on + strand, within HP15_3259 at 3413.062 kb on - strand, within HP15_3259 at 3413.248 kb on - strand, within HP15_3259 at 3413.361 kb on + strand, within HP15_3259 at 3413.586 kb on + strand, within HP15_3259 at 3413.616 kb on + strand, within HP15_3259 at 3413.676 kb on + strand at 3413.691 kb on + strand at 3414.087 kb on + strand, within HP15_3260 at 3414.276 kb on - strand at 3414.501 kb on - strand at 3414.731 kb on + strand, within HP15_3261 at 3414.731 kb on + strand, within HP15_3261 at 3414.739 kb on - strand, within HP15_3261 at 3414.739 kb on - strand, within HP15_3261 at 3414.822 kb on + strand, within HP15_3261 at 3414.950 kb on + strand, within HP15_3261 at 3415.061 kb on - strand, within HP15_3261 at 3415.061 kb on - strand, within HP15_3261 at 3415.133 kb on - strand, within HP15_3261 at 3415.136 kb on + strand, within HP15_3261 at 3415.163 kb on - strand, within HP15_3261 at 3415.183 kb on + strand, within HP15_3261 at 3415.184 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.203 kb on + strand, within HP15_3261
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 3,412,898 + +0.5 3,412,906 - -0.1 3,412,944 - +1.5 3,412,963 - +0.2 3,412,999 - HP15_3259 0.10 +0.0 3,413,054 + HP15_3259 0.17 +0.4 3,413,062 - HP15_3259 0.18 +0.7 3,413,248 - HP15_3259 0.42 -0.0 3,413,361 + HP15_3259 0.56 -0.1 3,413,586 + HP15_3259 0.85 +0.1 3,413,616 + HP15_3259 0.88 -0.0 3,413,676 + +0.0 3,413,691 + +0.0 3,414,087 + HP15_3260 0.74 -0.5 3,414,276 - +0.5 3,414,501 - -1.2 3,414,731 + HP15_3261 0.26 -1.5 3,414,731 + HP15_3261 0.26 -1.4 3,414,739 - HP15_3261 0.27 -1.4 3,414,739 - HP15_3261 0.27 -0.7 3,414,822 + HP15_3261 0.34 -0.6 3,414,950 + HP15_3261 0.46 +1.1 3,415,061 - HP15_3261 0.56 -0.3 3,415,061 - HP15_3261 0.56 +0.1 3,415,133 - HP15_3261 0.63 +0.5 3,415,136 + HP15_3261 0.63 -1.9 3,415,163 - HP15_3261 0.65 -1.2 3,415,183 + HP15_3261 0.67 -0.0 3,415,184 - HP15_3261 0.67 -0.6 3,415,201 - HP15_3261 0.69 -1.2 3,415,201 - HP15_3261 0.69 -0.9 3,415,201 - HP15_3261 0.69 -1.3 3,415,203 + HP15_3261 0.69 -1.0
Or see this region's nucleotide sequence