Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3210 and HP15_3211 are separated by 200 nucleotides HP15_3211 and HP15_3212 overlap by 19 nucleotides HP15_3212 and HP15_3213 are separated by 282 nucleotides
HP15_3210: HP15_3210 - cell division protein ZapA-like protein, at 3,361,502 to 3,361,798
_3210
HP15_3211: HP15_3211 - 5-formyltetrahydrofolate cyclo-ligase, at 3,361,999 to 3,362,682
_3211
HP15_3212: HP15_3212 - secreted protein, at 3,362,664 to 3,362,825
_3212
HP15_3213: HP15_3213 - threonine dehydratase biosynthetic, at 3,363,108 to 3,364,643
_3213
Position (kb)
3362
3363 Strain fitness (log2 ratio)
-1
0
1 at 3361.780 kb on - strand at 3361.833 kb on + strand at 3361.882 kb on - strand at 3361.882 kb on - strand at 3361.912 kb on + strand at 3361.912 kb on + strand at 3361.935 kb on - strand at 3362.010 kb on + strand at 3362.093 kb on - strand, within HP15_3211 at 3362.272 kb on + strand, within HP15_3211 at 3362.280 kb on - strand, within HP15_3211 at 3362.297 kb on - strand, within HP15_3211 at 3362.297 kb on - strand, within HP15_3211 at 3362.487 kb on + strand, within HP15_3211 at 3362.630 kb on + strand at 3362.683 kb on + strand, within HP15_3212 at 3362.732 kb on - strand, within HP15_3212 at 3362.815 kb on - strand at 3362.828 kb on + strand at 3363.002 kb on - strand at 3363.100 kb on - strand at 3363.121 kb on + strand at 3363.129 kb on - strand at 3363.129 kb on - strand at 3363.218 kb on - strand at 3363.218 kb on - strand at 3363.226 kb on - strand at 3363.255 kb on + strand at 3363.263 kb on - strand, within HP15_3213 at 3363.288 kb on + strand, within HP15_3213 at 3363.296 kb on - strand, within HP15_3213 at 3363.735 kb on - strand, within HP15_3213 at 3363.800 kb on - strand, within HP15_3213
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 3,361,780 - -1.0 3,361,833 + +0.0 3,361,882 - +0.4 3,361,882 - -0.0 3,361,912 + -0.4 3,361,912 + +0.6 3,361,935 - +1.2 3,362,010 + +0.5 3,362,093 - HP15_3211 0.14 -0.4 3,362,272 + HP15_3211 0.40 +0.6 3,362,280 - HP15_3211 0.41 +0.5 3,362,297 - HP15_3211 0.44 +0.3 3,362,297 - HP15_3211 0.44 -0.3 3,362,487 + HP15_3211 0.71 -0.7 3,362,630 + -0.5 3,362,683 + HP15_3212 0.12 -0.4 3,362,732 - HP15_3212 0.42 -0.2 3,362,815 - -0.3 3,362,828 + -0.2 3,363,002 - -0.1 3,363,100 - +0.3 3,363,121 + -0.1 3,363,129 - -0.1 3,363,129 - +0.2 3,363,218 - -1.1 3,363,218 - +0.1 3,363,226 - +1.0 3,363,255 + -0.0 3,363,263 - HP15_3213 0.10 +1.1 3,363,288 + HP15_3213 0.12 +0.5 3,363,296 - HP15_3213 0.12 +0.2 3,363,735 - HP15_3213 0.41 +0.1 3,363,800 - HP15_3213 0.45 +0.3
Or see this region's nucleotide sequence