Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3084 and HP15_3085 are separated by 104 nucleotides HP15_3085 and HP15_3086 are separated by 122 nucleotides HP15_3086 and HP15_3087 overlap by 7 nucleotides HP15_3087 and HP15_3088 overlap by 4 nucleotides HP15_3088 and HP15_3089 are separated by 72 nucleotides
HP15_3084: HP15_3084 - DNA repair protein RecN, at 3,239,819 to 3,241,498
_3084
HP15_3085: HP15_3085 - ferric-uptake regulator, at 3,241,603 to 3,242,013
_3085
HP15_3086: HP15_3086 - outer membrane lipoprotein OmlA, at 3,242,136 to 3,242,462
_3086
HP15_3087: HP15_3087 - protein belonging to uncharacterized protein family UPF0125, at 3,242,456 to 3,242,746
_3087
HP15_3088: HP15_3088 - oligoketide cyclase/lipid transport protein, at 3,242,743 to 3,243,189
_3088
HP15_3089: HP15_3089 - sodium-dependent transporter family protein, at 3,243,262 to 3,244,821
_3089
Position (kb)
3242
3243 Strain fitness (log2 ratio)
-1
0
1 at 3241.174 kb on - strand, within HP15_3084 at 3241.180 kb on - strand, within HP15_3084 at 3241.184 kb on - strand, within HP15_3084 at 3241.189 kb on - strand, within HP15_3084 at 3241.324 kb on - strand, within HP15_3084 at 3241.338 kb on + strand at 3241.429 kb on + strand at 3241.459 kb on - strand at 3241.487 kb on + strand at 3241.495 kb on - strand at 3241.495 kb on - strand at 3241.514 kb on + strand at 3241.547 kb on - strand at 3241.598 kb on - strand at 3242.409 kb on + strand, within HP15_3086 at 3242.456 kb on + strand at 3242.538 kb on - strand, within HP15_3087 at 3242.562 kb on - strand, within HP15_3087 at 3242.659 kb on + strand, within HP15_3087 at 3242.678 kb on - strand, within HP15_3087 at 3242.767 kb on - strand at 3242.914 kb on - strand, within HP15_3088 at 3242.978 kb on + strand, within HP15_3088 at 3243.041 kb on + strand, within HP15_3088 at 3243.159 kb on - strand at 3243.195 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 3,241,174 - HP15_3084 0.81 +0.5 3,241,180 - HP15_3084 0.81 +0.3 3,241,184 - HP15_3084 0.81 +0.4 3,241,189 - HP15_3084 0.82 +0.2 3,241,324 - HP15_3084 0.90 -0.3 3,241,338 + -1.0 3,241,429 + +0.6 3,241,459 - +0.3 3,241,487 + -0.4 3,241,495 - +0.0 3,241,495 - +0.2 3,241,514 + +0.1 3,241,547 - +0.7 3,241,598 - -0.2 3,242,409 + HP15_3086 0.83 -0.5 3,242,456 + +0.8 3,242,538 - HP15_3087 0.28 -0.2 3,242,562 - HP15_3087 0.36 -0.5 3,242,659 + HP15_3087 0.70 -0.9 3,242,678 - HP15_3087 0.76 +0.0 3,242,767 - +0.3 3,242,914 - HP15_3088 0.38 -0.3 3,242,978 + HP15_3088 0.53 -0.6 3,243,041 + HP15_3088 0.67 -0.3 3,243,159 - +0.1 3,243,195 + +1.0
Or see this region's nucleotide sequence