Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2796 and HP15_2797 are separated by 90 nucleotides HP15_2797 and HP15_2798 are separated by 66 nucleotides HP15_2798 and HP15_2799 are separated by 9 nucleotides
HP15_2796: HP15_2796 - serine protease, at 2,944,299 to 2,945,192
_2796
HP15_2797: HP15_2797 - glutathione S-transferase family protein, at 2,945,283 to 2,945,951
_2797
HP15_2798: HP15_2798 - protein containing cupin 2, conserved barrel domain, at 2,946,018 to 2,946,395
_2798
HP15_2799: HP15_2799 - hydrolase, alpha/beta fold family, at 2,946,405 to 2,947,193
_2799
Position (kb)
2945
2946 Strain fitness (log2 ratio)
-2
-1
0
1 at 2944.322 kb on - strand at 2944.353 kb on + strand at 2944.380 kb on - strand at 2944.504 kb on + strand, within HP15_2796 at 2944.511 kb on - strand, within HP15_2796 at 2944.511 kb on - strand, within HP15_2796 at 2944.548 kb on + strand, within HP15_2796 at 2944.553 kb on + strand, within HP15_2796 at 2944.553 kb on + strand, within HP15_2796 at 2944.553 kb on + strand, within HP15_2796 at 2944.562 kb on - strand, within HP15_2796 at 2944.716 kb on - strand, within HP15_2796 at 2944.730 kb on + strand, within HP15_2796 at 2944.830 kb on - strand, within HP15_2796 at 2944.847 kb on - strand, within HP15_2796 at 2944.847 kb on - strand, within HP15_2796 at 2944.962 kb on + strand, within HP15_2796 at 2944.963 kb on + strand, within HP15_2796 at 2944.963 kb on + strand, within HP15_2796 at 2944.970 kb on - strand, within HP15_2796 at 2945.099 kb on + strand, within HP15_2796 at 2945.133 kb on - strand at 2945.160 kb on + strand at 2945.204 kb on - strand at 2945.242 kb on + strand at 2945.250 kb on - strand at 2945.306 kb on - strand at 2945.552 kb on - strand, within HP15_2797 at 2945.552 kb on - strand, within HP15_2797 at 2945.597 kb on + strand, within HP15_2797 at 2945.633 kb on + strand, within HP15_2797 at 2945.675 kb on - strand, within HP15_2797 at 2945.738 kb on - strand, within HP15_2797 at 2945.842 kb on - strand, within HP15_2797 at 2945.875 kb on - strand, within HP15_2797 at 2945.904 kb on + strand at 2945.912 kb on - strand at 2945.928 kb on + strand at 2945.972 kb on + strand at 2946.176 kb on - strand, within HP15_2798 at 2946.285 kb on + strand, within HP15_2798 at 2946.310 kb on - strand, within HP15_2798 at 2946.332 kb on - strand, within HP15_2798 at 2946.411 kb on - strand at 2946.411 kb on - strand at 2946.461 kb on + strand at 2946.520 kb on + strand, within HP15_2799 at 2946.520 kb on + strand, within HP15_2799 at 2946.528 kb on - strand, within HP15_2799 at 2946.705 kb on - strand, within HP15_2799 at 2946.744 kb on - strand, within HP15_2799 at 2946.746 kb on + strand, within HP15_2799 at 2946.756 kb on - strand, within HP15_2799 at 2946.870 kb on + strand, within HP15_2799 at 2946.878 kb on - strand, within HP15_2799 at 2946.878 kb on - strand, within HP15_2799 at 2946.878 kb on - strand, within HP15_2799 at 2946.898 kb on - strand, within HP15_2799
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,944,322 - -0.3 2,944,353 + +0.9 2,944,380 - -0.2 2,944,504 + HP15_2796 0.23 +0.3 2,944,511 - HP15_2796 0.24 -1.1 2,944,511 - HP15_2796 0.24 -0.2 2,944,548 + HP15_2796 0.28 -0.3 2,944,553 + HP15_2796 0.28 +0.1 2,944,553 + HP15_2796 0.28 +0.0 2,944,553 + HP15_2796 0.28 -0.2 2,944,562 - HP15_2796 0.29 -0.2 2,944,716 - HP15_2796 0.47 -0.6 2,944,730 + HP15_2796 0.48 -0.2 2,944,830 - HP15_2796 0.59 +0.6 2,944,847 - HP15_2796 0.61 +0.2 2,944,847 - HP15_2796 0.61 +0.0 2,944,962 + HP15_2796 0.74 +0.5 2,944,963 + HP15_2796 0.74 -0.1 2,944,963 + HP15_2796 0.74 -0.1 2,944,970 - HP15_2796 0.75 +0.8 2,945,099 + HP15_2796 0.89 -0.3 2,945,133 - -0.2 2,945,160 + -0.1 2,945,204 - +0.9 2,945,242 + -0.2 2,945,250 - +0.3 2,945,306 - +0.1 2,945,552 - HP15_2797 0.40 -1.7 2,945,552 - HP15_2797 0.40 -0.6 2,945,597 + HP15_2797 0.47 -1.0 2,945,633 + HP15_2797 0.52 -0.3 2,945,675 - HP15_2797 0.59 -1.8 2,945,738 - HP15_2797 0.68 +0.2 2,945,842 - HP15_2797 0.84 +0.4 2,945,875 - HP15_2797 0.88 +0.3 2,945,904 + -2.2 2,945,912 - +0.0 2,945,928 + -0.6 2,945,972 + -0.0 2,946,176 - HP15_2798 0.42 -0.4 2,946,285 + HP15_2798 0.71 +0.4 2,946,310 - HP15_2798 0.77 +0.2 2,946,332 - HP15_2798 0.83 +0.1 2,946,411 - +0.1 2,946,411 - +0.2 2,946,461 + -0.4 2,946,520 + HP15_2799 0.15 +1.5 2,946,520 + HP15_2799 0.15 -0.1 2,946,528 - HP15_2799 0.16 -0.1 2,946,705 - HP15_2799 0.38 -0.1 2,946,744 - HP15_2799 0.43 -0.7 2,946,746 + HP15_2799 0.43 +0.0 2,946,756 - HP15_2799 0.44 -0.1 2,946,870 + HP15_2799 0.59 -0.5 2,946,878 - HP15_2799 0.60 -0.2 2,946,878 - HP15_2799 0.60 -0.4 2,946,878 - HP15_2799 0.60 +0.3 2,946,898 - HP15_2799 0.62 -0.2
Or see this region's nucleotide sequence