Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28180

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
2,942,556	-		PGA1_c28170	0.33	-0.8
2,942,568	+		PGA1_c28170	0.35	+0.1
2,942,607	+		PGA1_c28170	0.38	-0.7
2,942,607	+		PGA1_c28170	0.38	-0.2
2,942,607	+		PGA1_c28170	0.38	+0.0
2,942,607	+		PGA1_c28170	0.38	-0.2
2,942,607	+		PGA1_c28170	0.38	+0.2
2,942,607	+		PGA1_c28170	0.38	+0.4
2,942,607	+		PGA1_c28170	0.38	+0.5
2,942,607	+		PGA1_c28170	0.38	-0.1
2,942,607	+		PGA1_c28170	0.38	+0.5
2,942,607	+		PGA1_c28170	0.38	+0.0
2,942,612	+		PGA1_c28170	0.39	-0.0
2,942,615	-		PGA1_c28170	0.39	-0.9
2,942,615	-		PGA1_c28170	0.39	-0.9
2,942,615	-		PGA1_c28170	0.39	+0.1
2,942,615	-		PGA1_c28170	0.39	+0.7
2,942,615	-		PGA1_c28170	0.39	+0.5
2,942,615	-		PGA1_c28170	0.39	-0.8
2,942,615	-		PGA1_c28170	0.39	-0.5
2,942,615	-		PGA1_c28170	0.39	-0.5
2,942,741	+		PGA1_c28170	0.51	+0.3
2,942,810	-		PGA1_c28170	0.57	+0.6
2,942,885	+		PGA1_c28170	0.64	-1.7
2,942,885	+		PGA1_c28170	0.64	-0.2
2,942,885	+		PGA1_c28170	0.64	+1.1
2,942,886	+		PGA1_c28170	0.64	+0.4
2,942,893	-		PGA1_c28170	0.65	+0.6
2,942,893	-		PGA1_c28170	0.65	+0.3
2,942,901	-		PGA1_c28170	0.65	-0.2
2,942,901	-		PGA1_c28170	0.65	+0.2
2,942,901	-		PGA1_c28170	0.65	-1.0
2,942,901	-		PGA1_c28170	0.65	+0.5
2,942,967	-		PGA1_c28170	0.72	-0.7
2,942,986	+		PGA1_c28170	0.73	-0.1
2,943,040	-		PGA1_c28170	0.78	-1.0
2,943,078	-		PGA1_c28170	0.82	+0.2
2,943,115	+		PGA1_c28170	0.85	-0.3
2,943,175	+				+0.2
2,943,183	-				+0.9
2,943,184	+				-0.0
2,943,255	-				+0.1
2,943,382	+				-0.0
2,943,388	+				-0.7
2,943,390	-				+0.3
2,943,395	+				-1.2
2,943,395	+				-1.2
2,943,396	-				-0.1
2,943,403	-				-0.7
2,943,403	-				-1.2
2,943,492	-				-0.5
2,943,499	-				+1.0
2,943,539	-		PGA1_c28180	0.15	+0.1
2,943,570	+		PGA1_c28180	0.20	+0.7
2,943,587	+		PGA1_c28180	0.23	+0.1
2,943,589	+		PGA1_c28180	0.24	+0.1
2,943,618	+		PGA1_c28180	0.28	-1.6
2,943,618	+		PGA1_c28180	0.28	+0.4
2,943,683	+		PGA1_c28180	0.39	+0.2
2,943,704	-		PGA1_c28180	0.42	+0.1
2,943,753	+		PGA1_c28180	0.50	+0.7
2,943,753	+		PGA1_c28180	0.50	+0.4
2,943,761	-		PGA1_c28180	0.52	-0.0
2,943,784	-		PGA1_c28180	0.55	+0.9
2,943,828	+		PGA1_c28180	0.63	+0.6
2,943,843	+		PGA1_c28180	0.65	-0.8
2,943,851	-		PGA1_c28180	0.66	+0.1
2,943,852	+		PGA1_c28180	0.67	+0.6
2,943,977	-				+0.6
2,943,998	+				-0.2
2,944,030	-				+0.8
2,944,052	+				-1.0
2,944,062	+				-0.9
2,944,062	+				+0.6
2,944,062	+				-0.1
2,944,062	+				-0.6
2,944,062	+				-0.4
2,944,062	+				+1.0
2,944,062	+				-0.3
2,944,062	+				+0.5
2,944,062	+				+0.1
2,944,062	+				+0.9
2,944,062	+				-1.3
2,944,062	+				-0.3
2,944,062	+				-0.9
2,944,062	+				-0.2
2,944,062	+				-0.1
2,944,062	+				+1.2
2,944,062	+				-0.1
2,944,062	+				+0.1
2,944,062	+				-0.1
2,944,062	+				+1.0
2,944,062	+				+0.2
2,944,062	+				-0.1
2,944,062	+				-2.2
2,944,062	+				+0.7
2,944,062	+				-0.3
2,944,062	+				+0.2
2,944,062	+				+0.3
2,944,062	+				-0.6
2,944,062	+				-0.6
2,944,062	+				+0.2
2,944,062	+				+0.4
2,944,062	+				+0.1
2,944,062	+				+1.0
2,944,062	+				-0.4
2,944,062	+				-0.2
2,944,062	+				-0.6
2,944,062	+				-0.2
2,944,062	+				-0.3
2,944,062	+				-0.3
2,944,062	+				-1.0
2,944,062	+				+0.7
2,944,062	+				-0.7
2,944,062	+				-0.1
2,944,062	+				-1.0
2,944,070	-				+0.3
2,944,070	-				-0.4
2,944,070	-				+0.3
2,944,070	-				+1.0
2,944,070	-				-0.5
2,944,070	-				-0.0
2,944,070	-				-1.7
2,944,070	-				+1.0
2,944,070	-				-0.5
2,944,070	-				-1.1
2,944,070	-				+0.1
2,944,070	-				+1.2
2,944,070	-				+0.4
2,944,070	-				+0.3
2,944,070	-				-0.0
2,944,070	-				+0.2
2,944,070	-				+0.2
2,944,070	-				-0.6
2,944,070	-				+0.7
2,944,070	-				-0.0
2,944,070	-				-0.1
2,944,070	-				+0.8
2,944,070	-				+0.2
2,944,070	-				-1.1
2,944,070	-				-0.1
2,944,070	-				+0.7
2,944,070	-				+0.2
2,944,070	-				+0.2
2,944,070	-				+0.9
2,944,070	-				-1.1
2,944,070	-				+0.5
2,944,070	-				+0.0
2,944,070	-				+1.2
2,944,070	-				-0.1
2,944,070	-				+1.0
2,944,070	-				-0.0
2,944,070	-				+0.5
2,944,070	-				+0.6
2,944,070	-				+0.4
2,944,070	-				-0.1
2,944,070	-				-0.2
2,944,070	-				-0.1
2,944,070	-				+0.4
2,944,070	-				+1.2
2,944,070	-				-0.0
2,944,070	-				+0.3
2,944,070	-				+1.5
2,944,070	-				-1.4
2,944,070	-				+0.6
2,944,070	-				-0.6
2,944,095	+				-1.0
2,944,097	+				-0.2
2,944,202	-				+0.2
2,944,225	-				-0.3
2,944,275	+				-0.3
2,944,275	+				-0.8
2,944,275	+				-1.1
2,944,275	+				-0.0
2,944,283	-				-1.4
2,944,294	+		PGA1_c28190	0.10	+0.7
2,944,302	+		PGA1_c28190	0.11	-1.0
2,944,302	+		PGA1_c28190	0.11	+0.3
2,944,310	-		PGA1_c28190	0.12	-0.4
2,944,319	+		PGA1_c28190	0.13	+0.3
2,944,319	+		PGA1_c28190	0.13	+0.2
2,944,350	+		PGA1_c28190	0.16	+0.4
2,944,358	-		PGA1_c28190	0.17	-0.4
2,944,358	-		PGA1_c28190	0.17	+0.2
2,944,358	-		PGA1_c28190	0.17	+0.0
2,944,424	+		PGA1_c28190	0.24	+0.5
2,944,432	-		PGA1_c28190	0.25	-0.1
2,944,610	+		PGA1_c28190	0.43	-0.9
2,944,610	+		PGA1_c28190	0.43	-0.3
2,944,610	+		PGA1_c28190	0.43	+0.2
2,944,610	-		PGA1_c28190	0.43	+0.3
2,944,728	-		PGA1_c28190	0.56	+0.6
2,944,728	-		PGA1_c28190	0.56	+1.5
2,944,756	+		PGA1_c28190	0.58	+0.3
2,944,764	-		PGA1_c28190	0.59	-0.8
2,944,789	-		PGA1_c28190	0.62	+1.3
2,944,858	+		PGA1_c28190	0.69	+0.1
2,944,866	-		PGA1_c28190	0.70	+0.2
2,944,888	+		PGA1_c28190	0.72	-0.0
2,944,900	+		PGA1_c28190	0.74	+0.4
2,944,923	+		PGA1_c28190	0.76	-0.5
2,944,929	-		PGA1_c28190	0.77	-0.2
2,945,024	+		PGA1_c28190	0.87	-0.3
2,945,025	-		PGA1_c28190	0.87	+0.3