Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2697 and HP15_2698 are separated by 17 nucleotides HP15_2698 and HP15_2699 are separated by 12 nucleotides HP15_2699 and HP15_2700 overlap by 17 nucleotides
HP15_2697: HP15_2697 - phenylacetate-CoA oxygenase, PaaG subunit, at 2,850,022 to 2,851,014
_2697
HP15_2698: HP15_2698 - phenylacetate-CoA oxygenase, PaaH subunit, at 2,851,032 to 2,851,313
_2698
HP15_2699: HP15_2699 - phenylacetate-CoA oxygenase, PaaI subunit, at 2,851,326 to 2,852,090
_2699
HP15_2700: HP15_2700 - phenylacetate-CoA oxygenase, PaaJ subunit, at 2,852,074 to 2,852,643
_2700
Position (kb)
2851
2852 Strain fitness (log2 ratio)
-1
0
1 at 2850.065 kb on + strand at 2850.180 kb on + strand, within HP15_2697 at 2850.241 kb on - strand, within HP15_2697 at 2850.305 kb on + strand, within HP15_2697 at 2850.323 kb on - strand, within HP15_2697 at 2850.923 kb on - strand at 2850.967 kb on + strand at 2851.100 kb on - strand, within HP15_2698 at 2851.178 kb on - strand, within HP15_2698 at 2851.307 kb on + strand at 2851.315 kb on - strand at 2851.315 kb on - strand at 2851.356 kb on + strand at 2851.453 kb on + strand, within HP15_2699 at 2851.592 kb on + strand, within HP15_2699 at 2851.939 kb on - strand, within HP15_2699 at 2851.959 kb on - strand, within HP15_2699 at 2851.988 kb on + strand, within HP15_2699 at 2852.037 kb on - strand at 2852.207 kb on - strand, within HP15_2700 at 2852.231 kb on - strand, within HP15_2700 at 2852.301 kb on - strand, within HP15_2700
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,850,065 + -0.7 2,850,180 + HP15_2697 0.16 +0.4 2,850,241 - HP15_2697 0.22 +0.6 2,850,305 + HP15_2697 0.28 -0.8 2,850,323 - HP15_2697 0.30 +0.3 2,850,923 - -0.4 2,850,967 + +0.0 2,851,100 - HP15_2698 0.24 -1.0 2,851,178 - HP15_2698 0.52 -1.0 2,851,307 + -0.4 2,851,315 - +0.1 2,851,315 - -0.3 2,851,356 + +1.0 2,851,453 + HP15_2699 0.17 -0.6 2,851,592 + HP15_2699 0.35 -1.2 2,851,939 - HP15_2699 0.80 -0.7 2,851,959 - HP15_2699 0.83 -0.5 2,851,988 + HP15_2699 0.87 +0.5 2,852,037 - -0.0 2,852,207 - HP15_2700 0.23 -1.3 2,852,231 - HP15_2700 0.28 -0.7 2,852,301 - HP15_2700 0.40 +0.2
Or see this region's nucleotide sequence