Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2464 and HP15_2465 are separated by 162 nucleotides HP15_2465 and HP15_2466 are separated by 185 nucleotides
HP15_2464: HP15_2464 - nucleoid-associated protein NdpA, at 2,603,823 to 2,604,839
_2464
HP15_2465: HP15_2465 - tRNA guanosine-2'-O-methyltransferase, at 2,605,002 to 2,605,739
_2465
HP15_2466: HP15_2466 - tRNA-i(6)A37 thiotransferase enzyme MiaB, at 2,605,925 to 2,607,271
_2466
Position (kb)
2605
2606 Strain fitness (log2 ratio)
-1
0
1 at 2604.110 kb on - strand, within HP15_2464 at 2604.123 kb on - strand, within HP15_2464 at 2604.328 kb on + strand, within HP15_2464 at 2604.432 kb on - strand, within HP15_2464 at 2604.452 kb on - strand, within HP15_2464 at 2604.708 kb on + strand, within HP15_2464 at 2604.726 kb on - strand, within HP15_2464 at 2604.793 kb on - strand at 2604.884 kb on + strand at 2604.884 kb on + strand at 2604.892 kb on - strand at 2605.031 kb on + strand at 2605.091 kb on - strand, within HP15_2465 at 2605.091 kb on - strand, within HP15_2465 at 2605.156 kb on + strand, within HP15_2465 at 2605.258 kb on + strand, within HP15_2465 at 2605.266 kb on - strand, within HP15_2465 at 2605.281 kb on + strand, within HP15_2465 at 2605.373 kb on - strand, within HP15_2465 at 2605.388 kb on + strand, within HP15_2465 at 2605.416 kb on - strand, within HP15_2465 at 2605.446 kb on + strand, within HP15_2465 at 2605.463 kb on + strand, within HP15_2465 at 2605.942 kb on + strand at 2605.949 kb on + strand at 2605.997 kb on - strand at 2605.997 kb on - strand at 2606.198 kb on + strand, within HP15_2466 at 2606.287 kb on + strand, within HP15_2466 at 2606.295 kb on + strand, within HP15_2466 at 2606.295 kb on - strand, within HP15_2466 at 2606.450 kb on - strand, within HP15_2466 at 2606.677 kb on - strand, within HP15_2466 at 2606.734 kb on - strand, within HP15_2466
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,604,110 - HP15_2464 0.28 +0.3 2,604,123 - HP15_2464 0.29 -0.1 2,604,328 + HP15_2464 0.50 -1.2 2,604,432 - HP15_2464 0.60 +0.2 2,604,452 - HP15_2464 0.62 +0.8 2,604,708 + HP15_2464 0.87 +1.0 2,604,726 - HP15_2464 0.89 +0.0 2,604,793 - +0.1 2,604,884 + -0.2 2,604,884 + -0.2 2,604,892 - +0.6 2,605,031 + -0.0 2,605,091 - HP15_2465 0.12 -0.3 2,605,091 - HP15_2465 0.12 -1.5 2,605,156 + HP15_2465 0.21 +0.3 2,605,258 + HP15_2465 0.35 -0.6 2,605,266 - HP15_2465 0.36 -0.2 2,605,281 + HP15_2465 0.38 -0.3 2,605,373 - HP15_2465 0.50 -1.0 2,605,388 + HP15_2465 0.52 +0.1 2,605,416 - HP15_2465 0.56 -0.3 2,605,446 + HP15_2465 0.60 -0.2 2,605,463 + HP15_2465 0.62 -1.6 2,605,942 + +0.1 2,605,949 + -0.5 2,605,997 - +0.3 2,605,997 - -0.8 2,606,198 + HP15_2466 0.20 -0.5 2,606,287 + HP15_2466 0.27 +0.2 2,606,295 + HP15_2466 0.27 -0.2 2,606,295 - HP15_2466 0.27 +0.1 2,606,450 - HP15_2466 0.39 +0.5 2,606,677 - HP15_2466 0.56 -0.9 2,606,734 - HP15_2466 0.60 -0.3
Or see this region's nucleotide sequence