Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2415 and HP15_2416 are separated by 95 nucleotides HP15_2416 and HP15_2417 are separated by 112 nucleotides HP15_2417 and HP15_2418 are separated by 180 nucleotides
HP15_2415: HP15_2415 - sensory box sensor histidine kinase/response regulator, at 2,549,872 to 2,552,223
_2415
HP15_2416: HP15_2416 - zinc-binding protein, at 2,552,319 to 2,552,474
_2416
HP15_2417: HP15_2417 - YfaZ family protein, at 2,552,587 to 2,553,144
_2417
HP15_2418: HP15_2418 - conserved hypothetical protein, at 2,553,325 to 2,555,457
_2418
Position (kb)
2552
2553 Strain fitness (log2 ratio)
-1
0
1 at 2551.405 kb on - strand, within HP15_2415 at 2551.607 kb on - strand, within HP15_2415 at 2551.860 kb on + strand, within HP15_2415 at 2551.936 kb on + strand, within HP15_2415 at 2552.004 kb on - strand at 2552.023 kb on - strand at 2552.298 kb on + strand at 2552.364 kb on - strand, within HP15_2416 at 2552.448 kb on - strand, within HP15_2416 at 2552.468 kb on + strand at 2552.476 kb on - strand at 2552.733 kb on + strand, within HP15_2417 at 2552.862 kb on - strand, within HP15_2417 at 2553.309 kb on + strand at 2553.310 kb on - strand at 2553.310 kb on - strand at 2553.319 kb on + strand at 2553.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,551,405 - HP15_2415 0.65 +0.1 2,551,607 - HP15_2415 0.74 +0.1 2,551,860 + HP15_2415 0.85 -0.7 2,551,936 + HP15_2415 0.88 -1.3 2,552,004 - -1.0 2,552,023 - +0.2 2,552,298 + -0.4 2,552,364 - HP15_2416 0.29 -0.1 2,552,448 - HP15_2416 0.83 -1.2 2,552,468 + +1.0 2,552,476 - +0.0 2,552,733 + HP15_2417 0.26 -0.1 2,552,862 - HP15_2417 0.49 -0.2 2,553,309 + +0.6 2,553,310 - -0.1 2,553,310 - -0.6 2,553,319 + -0.2 2,553,390 - +0.5
Or see this region's nucleotide sequence