Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23960 and PGA1_c23970 are separated by 102 nucleotides PGA1_c23970 and PGA1_c23980 are separated by 89 nucleotides PGA1_c23980 and PGA1_c23990 are separated by 216 nucleotides PGA1_c23990 and PGA1_c24000 are separated by 188 nucleotides
PGA1_c23960: PGA1_c23960 - tRNA-modifying protein ygfZ-like protein, at 2,501,979 to 2,502,719
_c23960
PGA1_c23970: PGA1_c23970 - hypothetical protein, at 2,502,822 to 2,503,391
_c23970
PGA1_c23980: PGA1_c23980 - translation elongation factor P, at 2,503,481 to 2,504,044
_c23980
PGA1_c23990: PGA1_c23990 - hypothetical protein, at 2,504,261 to 2,504,578
_c23990
PGA1_c24000: PGA1_c24000 - cobyric acid synthase CobQ, at 2,504,767 to 2,506,227
_c24000
Position (kb)
2503
2504
2505 Strain fitness (log2 ratio)
-1
0
1 at 2502.520 kb on - strand, within PGA1_c23960 at 2502.707 kb on + strand at 2502.708 kb on + strand at 2502.708 kb on + strand at 2502.833 kb on + strand at 2502.846 kb on - strand at 2502.891 kb on + strand, within PGA1_c23970 at 2502.899 kb on - strand, within PGA1_c23970 at 2502.909 kb on - strand, within PGA1_c23970 at 2502.928 kb on - strand, within PGA1_c23970 at 2503.049 kb on + strand, within PGA1_c23970 at 2503.072 kb on + strand, within PGA1_c23970 at 2503.082 kb on + strand, within PGA1_c23970 at 2503.090 kb on - strand, within PGA1_c23970 at 2503.092 kb on + strand, within PGA1_c23970 at 2503.290 kb on - strand, within PGA1_c23970 at 2503.354 kb on + strand at 2503.354 kb on + strand at 2503.354 kb on + strand at 2503.362 kb on - strand at 2503.485 kb on - strand at 2503.596 kb on - strand, within PGA1_c23980 at 2503.615 kb on - strand, within PGA1_c23980 at 2503.751 kb on - strand, within PGA1_c23980 at 2503.779 kb on - strand, within PGA1_c23980 at 2503.950 kb on + strand, within PGA1_c23980 at 2504.563 kb on + strand at 2504.577 kb on + strand at 2504.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 2,502,520 - PGA1_c23960 0.73 +0.2 2,502,707 + +0.7 2,502,708 + -1.6 2,502,708 + -0.9 2,502,833 + -1.2 2,502,846 - -0.3 2,502,891 + PGA1_c23970 0.12 -0.1 2,502,899 - PGA1_c23970 0.14 +0.0 2,502,909 - PGA1_c23970 0.15 -0.2 2,502,928 - PGA1_c23970 0.19 -1.3 2,503,049 + PGA1_c23970 0.40 +0.5 2,503,072 + PGA1_c23970 0.44 +0.6 2,503,082 + PGA1_c23970 0.46 -0.4 2,503,090 - PGA1_c23970 0.47 -1.1 2,503,092 + PGA1_c23970 0.47 -1.1 2,503,290 - PGA1_c23970 0.82 -0.1 2,503,354 + +0.7 2,503,354 + +0.2 2,503,354 + -0.1 2,503,362 - -1.3 2,503,485 - +0.2 2,503,596 - PGA1_c23980 0.20 +1.0 2,503,615 - PGA1_c23980 0.24 +0.5 2,503,751 - PGA1_c23980 0.48 +0.6 2,503,779 - PGA1_c23980 0.53 -0.5 2,503,950 + PGA1_c23980 0.83 +0.9 2,504,563 + -0.1 2,504,577 + -0.4 2,504,601 + +0.1
Or see this region's nucleotide sequence