Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2266 and HP15_2267 are separated by 124 nucleotides HP15_2267 and HP15_2268 are separated by 114 nucleotides HP15_2268 and HP15_2269 are separated by 65 nucleotides
HP15_2266: HP15_2266 - rRNA (guanine-N(2)-)-methyltransferase, at 2,387,137 to 2,388,183
_2266
HP15_2267: HP15_2267 - hypothetical protein, at 2,388,308 to 2,388,487
_2267
HP15_2268: HP15_2268 - carbonate dehydratase, at 2,388,602 to 2,389,285
_2268
HP15_2269: HP15_2269 - NAD-specific glutamate dehydrogenase, at 2,389,351 to 2,394,237
_2269
Position (kb)
2388
2389 Strain fitness (log2 ratio)
-1
0
1
2 at 2387.336 kb on + strand, within HP15_2266 at 2387.366 kb on - strand, within HP15_2266 at 2387.402 kb on + strand, within HP15_2266 at 2387.402 kb on + strand, within HP15_2266 at 2387.410 kb on - strand, within HP15_2266 at 2387.435 kb on + strand, within HP15_2266 at 2387.438 kb on - strand, within HP15_2266 at 2387.450 kb on - strand, within HP15_2266 at 2387.496 kb on + strand, within HP15_2266 at 2387.589 kb on - strand, within HP15_2266 at 2387.706 kb on + strand, within HP15_2266 at 2387.767 kb on - strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.821 kb on - strand, within HP15_2266 at 2387.886 kb on + strand, within HP15_2266 at 2387.935 kb on - strand, within HP15_2266 at 2387.979 kb on + strand, within HP15_2266 at 2388.028 kb on + strand, within HP15_2266 at 2388.188 kb on - strand at 2388.197 kb on - strand at 2388.216 kb on - strand at 2388.352 kb on - strand, within HP15_2267 at 2388.368 kb on - strand, within HP15_2267 at 2388.537 kb on - strand at 2388.631 kb on + strand at 2388.631 kb on + strand at 2388.670 kb on - strand at 2388.855 kb on + strand, within HP15_2268 at 2388.972 kb on - strand, within HP15_2268 at 2388.986 kb on + strand, within HP15_2268 at 2389.058 kb on + strand, within HP15_2268 at 2389.058 kb on + strand, within HP15_2268 at 2389.058 kb on + strand, within HP15_2268 at 2389.066 kb on - strand, within HP15_2268 at 2389.143 kb on - strand, within HP15_2268 at 2389.183 kb on - strand, within HP15_2268 at 2389.337 kb on + strand at 2389.345 kb on - strand at 2389.372 kb on - strand at 2389.386 kb on + strand at 2389.396 kb on + strand at 2389.424 kb on - strand at 2389.463 kb on + strand at 2389.463 kb on + strand at 2389.463 kb on + strand at 2389.463 kb on + strand at 2389.463 kb on + strand at 2389.471 kb on - strand at 2389.471 kb on - strand at 2389.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,387,336 + HP15_2266 0.19 -0.9 2,387,366 - HP15_2266 0.22 -1.4 2,387,402 + HP15_2266 0.25 +0.1 2,387,402 + HP15_2266 0.25 +0.0 2,387,410 - HP15_2266 0.26 +1.5 2,387,435 + HP15_2266 0.28 -0.7 2,387,438 - HP15_2266 0.29 +0.1 2,387,450 - HP15_2266 0.30 +0.1 2,387,496 + HP15_2266 0.34 -0.6 2,387,589 - HP15_2266 0.43 +0.1 2,387,706 + HP15_2266 0.54 +0.0 2,387,767 - HP15_2266 0.60 +0.1 2,387,813 + HP15_2266 0.65 +0.6 2,387,813 + HP15_2266 0.65 -0.0 2,387,813 + HP15_2266 0.65 +0.4 2,387,821 - HP15_2266 0.65 -0.2 2,387,886 + HP15_2266 0.72 +0.6 2,387,935 - HP15_2266 0.76 -0.6 2,387,979 + HP15_2266 0.80 +0.4 2,388,028 + HP15_2266 0.85 -0.8 2,388,188 - -0.3 2,388,197 - -0.1 2,388,216 - +0.1 2,388,352 - HP15_2267 0.24 +0.3 2,388,368 - HP15_2267 0.33 -0.8 2,388,537 - +0.2 2,388,631 + -0.2 2,388,631 + +0.1 2,388,670 - +0.8 2,388,855 + HP15_2268 0.37 +0.0 2,388,972 - HP15_2268 0.54 +2.0 2,388,986 + HP15_2268 0.56 +1.8 2,389,058 + HP15_2268 0.67 +0.8 2,389,058 + HP15_2268 0.67 +0.4 2,389,058 + HP15_2268 0.67 -1.3 2,389,066 - HP15_2268 0.68 -0.1 2,389,143 - HP15_2268 0.79 +0.0 2,389,183 - HP15_2268 0.85 +0.8 2,389,337 + -0.3 2,389,345 - -0.1 2,389,372 - -0.0 2,389,386 + +0.1 2,389,396 + +0.6 2,389,424 - +0.9 2,389,463 + -0.1 2,389,463 + -1.2 2,389,463 + -0.8 2,389,463 + -0.2 2,389,463 + -0.2 2,389,471 - +0.0 2,389,471 - -0.9 2,389,471 - -0.4
Or see this region's nucleotide sequence