Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2226 and HP15_2227 are separated by 4 nucleotides HP15_2227 and HP15_2228 are separated by 51 nucleotides HP15_2228 and HP15_2229 are separated by 30 nucleotides HP15_2229 and HP15_2230 are separated by 179 nucleotides
HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577
_2226
HP15_2227: HP15_2227 - protein containing type IV pilus assembly PilZ domain, at 2,344,582 to 2,344,872
_2227
HP15_2228: HP15_2228 - ribonuclease activity regulator protein RraA, at 2,344,924 to 2,345,403
_2228
HP15_2229: HP15_2229 - phosphoenolpyruvate synthase, at 2,345,434 to 2,347,806
_2229
HP15_2230: HP15_2230 - phosphotransferase YdiA, at 2,347,986 to 2,348,801
_2230
Position (kb)
2345
2346
2347
2348 Strain fitness (log2 ratio)
-1
0
1 at 2344.616 kb on + strand, within HP15_2227 at 2344.646 kb on + strand, within HP15_2227 at 2344.679 kb on + strand, within HP15_2227 at 2344.712 kb on + strand, within HP15_2227 at 2344.769 kb on - strand, within HP15_2227 at 2345.019 kb on + strand, within HP15_2228 at 2345.042 kb on - strand, within HP15_2228 at 2345.897 kb on - strand, within HP15_2229 at 2346.128 kb on - strand, within HP15_2229 at 2346.131 kb on + strand, within HP15_2229 at 2346.247 kb on - strand, within HP15_2229 at 2346.974 kb on - strand, within HP15_2229 at 2347.119 kb on - strand, within HP15_2229 at 2347.137 kb on + strand, within HP15_2229 at 2347.145 kb on - strand, within HP15_2229 at 2347.305 kb on - strand, within HP15_2229 at 2347.825 kb on - strand at 2347.875 kb on + strand at 2347.964 kb on + strand at 2347.972 kb on - strand at 2348.031 kb on + strand at 2348.085 kb on - strand, within HP15_2230 at 2348.102 kb on - strand, within HP15_2230 at 2348.167 kb on + strand, within HP15_2230 at 2348.280 kb on - strand, within HP15_2230 at 2348.344 kb on + strand, within HP15_2230 at 2348.352 kb on - strand, within HP15_2230 at 2348.538 kb on + strand, within HP15_2230 at 2348.666 kb on + strand, within HP15_2230 at 2348.726 kb on + strand at 2348.756 kb on - strand at 2348.796 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,344,616 + HP15_2227 0.12 +0.1 2,344,646 + HP15_2227 0.22 +0.0 2,344,679 + HP15_2227 0.33 +0.1 2,344,712 + HP15_2227 0.45 +0.0 2,344,769 - HP15_2227 0.64 +1.6 2,345,019 + HP15_2228 0.20 -0.0 2,345,042 - HP15_2228 0.25 +0.0 2,345,897 - HP15_2229 0.20 -1.3 2,346,128 - HP15_2229 0.29 -0.8 2,346,131 + HP15_2229 0.29 -0.6 2,346,247 - HP15_2229 0.34 +0.5 2,346,974 - HP15_2229 0.65 -0.2 2,347,119 - HP15_2229 0.71 -0.7 2,347,137 + HP15_2229 0.72 -0.7 2,347,145 - HP15_2229 0.72 +0.5 2,347,305 - HP15_2229 0.79 +0.8 2,347,825 - -0.1 2,347,875 + -1.0 2,347,964 + +0.3 2,347,972 - +0.1 2,348,031 + -0.1 2,348,085 - HP15_2230 0.12 +1.6 2,348,102 - HP15_2230 0.14 -1.6 2,348,167 + HP15_2230 0.22 +0.1 2,348,280 - HP15_2230 0.36 +0.6 2,348,344 + HP15_2230 0.44 -0.0 2,348,352 - HP15_2230 0.45 -0.4 2,348,538 + HP15_2230 0.68 -0.2 2,348,666 + HP15_2230 0.83 +0.1 2,348,726 + +0.4 2,348,756 - -0.4 2,348,796 + -0.4
Or see this region's nucleotide sequence