Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2222 and HP15_2223 are separated by 3 nucleotides HP15_2223 and HP15_2224 overlap by 4 nucleotides HP15_2224 and HP15_2225 are separated by 155 nucleotides HP15_2225 and HP15_2226 are separated by 151 nucleotides
HP15_2222: HP15_2222 - ribonuclease, Rne/Rng family, at 2,338,705 to 2,341,929
_2222
HP15_2223: HP15_2223 - protein containing YgfB and YecA domain, at 2,341,933 to 2,342,475
_2223
HP15_2224: HP15_2224 - PHP C-terminal domain protein, at 2,342,472 to 2,343,326
_2224
HP15_2225: HP15_2225 - YciI-like protein, at 2,343,482 to 2,343,781
_2225
HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577
_2226
Position (kb)
2342
2343
2344 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2341.548 kb on + strand, within HP15_2222 at 2341.556 kb on - strand, within HP15_2222 at 2341.685 kb on - strand at 2341.695 kb on - strand at 2341.914 kb on + strand at 2341.991 kb on - strand, within HP15_2223 at 2342.061 kb on - strand, within HP15_2223 at 2342.130 kb on + strand, within HP15_2223 at 2342.200 kb on - strand, within HP15_2223 at 2342.348 kb on + strand, within HP15_2223 at 2342.356 kb on - strand, within HP15_2223 at 2342.364 kb on - strand, within HP15_2223 at 2342.477 kb on - strand at 2342.477 kb on - strand at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.563 kb on + strand, within HP15_2224 at 2342.676 kb on - strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.908 kb on + strand, within HP15_2224 at 2342.916 kb on - strand, within HP15_2224 at 2343.389 kb on + strand at 2343.409 kb on - strand at 2343.463 kb on + strand at 2343.627 kb on - strand, within HP15_2225 at 2343.639 kb on + strand, within HP15_2225
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,341,548 + HP15_2222 0.88 +0.2 2,341,556 - HP15_2222 0.88 -0.0 2,341,685 - +0.0 2,341,695 - +0.2 2,341,914 + +0.3 2,341,991 - HP15_2223 0.11 +0.2 2,342,061 - HP15_2223 0.24 +0.2 2,342,130 + HP15_2223 0.36 -0.2 2,342,200 - HP15_2223 0.49 -0.3 2,342,348 + HP15_2223 0.76 -0.0 2,342,356 - HP15_2223 0.78 -0.4 2,342,364 - HP15_2223 0.79 +0.2 2,342,477 - +1.4 2,342,477 - +0.2 2,342,530 - +0.1 2,342,530 - +0.2 2,342,530 - +0.2 2,342,563 + HP15_2224 0.11 -0.8 2,342,676 - HP15_2224 0.24 -0.0 2,342,896 + HP15_2224 0.50 -0.3 2,342,896 + HP15_2224 0.50 +0.0 2,342,908 + HP15_2224 0.51 -2.8 2,342,916 - HP15_2224 0.52 +0.0 2,343,389 + +0.1 2,343,409 - -0.1 2,343,463 + +0.8 2,343,627 - HP15_2225 0.48 -0.3 2,343,639 + HP15_2225 0.52 -0.2
Or see this region's nucleotide sequence