Strain Fitness in Marinobacter adhaerens HP15 around HP15_2224

Experiment: m.b. Tetracycline 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2222 and HP15_2223 are separated by 3 nucleotidesHP15_2223 and HP15_2224 overlap by 4 nucleotidesHP15_2224 and HP15_2225 are separated by 155 nucleotidesHP15_2225 and HP15_2226 are separated by 151 nucleotides HP15_2222: HP15_2222 - ribonuclease, Rne/Rng family, at 2,338,705 to 2,341,929 _2222 HP15_2223: HP15_2223 - protein containing YgfB and YecA domain, at 2,341,933 to 2,342,475 _2223 HP15_2224: HP15_2224 - PHP C-terminal domain protein, at 2,342,472 to 2,343,326 _2224 HP15_2225: HP15_2225 - YciI-like protein, at 2,343,482 to 2,343,781 _2225 HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577 _2226 Position (kb) 2342 2343 2344Strain fitness (log2 ratio) -3 -2 -1 0 1at 2341.548 kb on + strand, within HP15_2222at 2341.556 kb on - strand, within HP15_2222at 2341.685 kb on - strandat 2341.695 kb on - strandat 2341.914 kb on + strandat 2341.991 kb on - strand, within HP15_2223at 2342.061 kb on - strand, within HP15_2223at 2342.130 kb on + strand, within HP15_2223at 2342.200 kb on - strand, within HP15_2223at 2342.348 kb on + strand, within HP15_2223at 2342.356 kb on - strand, within HP15_2223at 2342.364 kb on - strand, within HP15_2223at 2342.477 kb on - strandat 2342.477 kb on - strandat 2342.530 kb on - strandat 2342.530 kb on - strandat 2342.530 kb on - strandat 2342.563 kb on + strand, within HP15_2224at 2342.676 kb on - strand, within HP15_2224at 2342.896 kb on + strand, within HP15_2224at 2342.896 kb on + strand, within HP15_2224at 2342.908 kb on + strand, within HP15_2224at 2342.916 kb on - strand, within HP15_2224at 2343.389 kb on + strandat 2343.409 kb on - strandat 2343.463 kb on + strandat 2343.627 kb on - strand, within HP15_2225at 2343.639 kb on + strand, within HP15_2225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
remove
2,341,548 + HP15_2222 0.88 +0.2
2,341,556 - HP15_2222 0.88 -0.0
2,341,685 - +0.0
2,341,695 - +0.2
2,341,914 + +0.3
2,341,991 - HP15_2223 0.11 +0.2
2,342,061 - HP15_2223 0.24 +0.2
2,342,130 + HP15_2223 0.36 -0.2
2,342,200 - HP15_2223 0.49 -0.3
2,342,348 + HP15_2223 0.76 -0.0
2,342,356 - HP15_2223 0.78 -0.4
2,342,364 - HP15_2223 0.79 +0.2
2,342,477 - +1.4
2,342,477 - +0.2
2,342,530 - +0.1
2,342,530 - +0.2
2,342,530 - +0.2
2,342,563 + HP15_2224 0.11 -0.8
2,342,676 - HP15_2224 0.24 -0.0
2,342,896 + HP15_2224 0.50 -0.3
2,342,896 + HP15_2224 0.50 +0.0
2,342,908 + HP15_2224 0.51 -2.8
2,342,916 - HP15_2224 0.52 +0.0
2,343,389 + +0.1
2,343,409 - -0.1
2,343,463 + +0.8
2,343,627 - HP15_2225 0.48 -0.3
2,343,639 + HP15_2225 0.52 -0.2

Or see this region's nucleotide sequence