Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2134 and HP15_2135 are separated by 2 nucleotides HP15_2135 and HP15_2136 overlap by 4 nucleotides HP15_2136 and HP15_2137 are separated by 91 nucleotides
HP15_2134: HP15_2134 - conserved hypothetical protein, at 2,236,110 to 2,237,111
_2134
HP15_2135: HP15_2135 - biopolymer transport protein ExbD/TolR, at 2,237,114 to 2,237,614
_2135
HP15_2136: HP15_2136 - biopolymer transport protein ExbD/TolR, at 2,237,611 to 2,238,057
_2136
HP15_2137: HP15_2137 - biopolymer transport protein, at 2,238,149 to 2,238,856
_2137
Position (kb)
2237
2238 Strain fitness (log2 ratio)
-2
-1
0
1 at 2236.193 kb on - strand at 2236.264 kb on - strand, within HP15_2134 at 2236.283 kb on + strand, within HP15_2134 at 2236.443 kb on - strand, within HP15_2134 at 2236.463 kb on - strand, within HP15_2134 at 2236.496 kb on + strand, within HP15_2134 at 2236.660 kb on + strand, within HP15_2134 at 2236.699 kb on + strand, within HP15_2134 at 2236.834 kb on + strand, within HP15_2134 at 2236.834 kb on + strand, within HP15_2134 at 2236.842 kb on - strand, within HP15_2134 at 2236.985 kb on + strand, within HP15_2134 at 2237.224 kb on + strand, within HP15_2135 at 2237.263 kb on + strand, within HP15_2135 at 2237.312 kb on + strand, within HP15_2135 at 2237.318 kb on - strand, within HP15_2135 at 2237.338 kb on - strand, within HP15_2135 at 2237.402 kb on - strand, within HP15_2135 at 2237.406 kb on - strand, within HP15_2135 at 2237.459 kb on - strand, within HP15_2135 at 2237.495 kb on - strand, within HP15_2135 at 2237.706 kb on + strand, within HP15_2136 at 2237.831 kb on + strand, within HP15_2136 at 2237.839 kb on - strand, within HP15_2136 at 2238.002 kb on + strand, within HP15_2136 at 2238.002 kb on + strand, within HP15_2136 at 2238.061 kb on - strand at 2238.300 kb on + strand, within HP15_2137 at 2238.308 kb on - strand, within HP15_2137 at 2238.318 kb on + strand, within HP15_2137 at 2238.368 kb on + strand, within HP15_2137 at 2238.465 kb on + strand, within HP15_2137 at 2238.500 kb on - strand, within HP15_2137 at 2238.523 kb on + strand, within HP15_2137
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,236,193 - -0.7 2,236,264 - HP15_2134 0.15 -0.1 2,236,283 + HP15_2134 0.17 -1.8 2,236,443 - HP15_2134 0.33 +0.0 2,236,463 - HP15_2134 0.35 -1.8 2,236,496 + HP15_2134 0.39 +0.4 2,236,660 + HP15_2134 0.55 -0.2 2,236,699 + HP15_2134 0.59 -0.3 2,236,834 + HP15_2134 0.72 -0.0 2,236,834 + HP15_2134 0.72 -0.2 2,236,842 - HP15_2134 0.73 +0.2 2,236,985 + HP15_2134 0.87 +0.1 2,237,224 + HP15_2135 0.22 +0.0 2,237,263 + HP15_2135 0.30 -0.9 2,237,312 + HP15_2135 0.40 -1.2 2,237,318 - HP15_2135 0.41 -0.1 2,237,338 - HP15_2135 0.45 -0.6 2,237,402 - HP15_2135 0.57 -0.3 2,237,406 - HP15_2135 0.58 -0.8 2,237,459 - HP15_2135 0.69 -0.3 2,237,495 - HP15_2135 0.76 -0.1 2,237,706 + HP15_2136 0.21 -0.2 2,237,831 + HP15_2136 0.49 +0.1 2,237,839 - HP15_2136 0.51 +0.4 2,238,002 + HP15_2136 0.87 +0.5 2,238,002 + HP15_2136 0.87 +0.0 2,238,061 - +1.4 2,238,300 + HP15_2137 0.21 -0.1 2,238,308 - HP15_2137 0.22 +0.8 2,238,318 + HP15_2137 0.24 +0.6 2,238,368 + HP15_2137 0.31 +0.1 2,238,465 + HP15_2137 0.45 -1.1 2,238,500 - HP15_2137 0.50 +0.3 2,238,523 + HP15_2137 0.53 -0.6
Or see this region's nucleotide sequence