Strain Fitness in Marinobacter adhaerens HP15 around HP15_2135

Experiment: m.b. Tetracycline 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2134 and HP15_2135 are separated by 2 nucleotidesHP15_2135 and HP15_2136 overlap by 4 nucleotidesHP15_2136 and HP15_2137 are separated by 91 nucleotides HP15_2134: HP15_2134 - conserved hypothetical protein, at 2,236,110 to 2,237,111 _2134 HP15_2135: HP15_2135 - biopolymer transport protein ExbD/TolR, at 2,237,114 to 2,237,614 _2135 HP15_2136: HP15_2136 - biopolymer transport protein ExbD/TolR, at 2,237,611 to 2,238,057 _2136 HP15_2137: HP15_2137 - biopolymer transport protein, at 2,238,149 to 2,238,856 _2137 Position (kb) 2237 2238Strain fitness (log2 ratio) -2 -1 0 1at 2236.193 kb on - strandat 2236.264 kb on - strand, within HP15_2134at 2236.283 kb on + strand, within HP15_2134at 2236.443 kb on - strand, within HP15_2134at 2236.463 kb on - strand, within HP15_2134at 2236.496 kb on + strand, within HP15_2134at 2236.660 kb on + strand, within HP15_2134at 2236.699 kb on + strand, within HP15_2134at 2236.834 kb on + strand, within HP15_2134at 2236.834 kb on + strand, within HP15_2134at 2236.842 kb on - strand, within HP15_2134at 2236.985 kb on + strand, within HP15_2134at 2237.224 kb on + strand, within HP15_2135at 2237.263 kb on + strand, within HP15_2135at 2237.312 kb on + strand, within HP15_2135at 2237.318 kb on - strand, within HP15_2135at 2237.338 kb on - strand, within HP15_2135at 2237.402 kb on - strand, within HP15_2135at 2237.406 kb on - strand, within HP15_2135at 2237.459 kb on - strand, within HP15_2135at 2237.495 kb on - strand, within HP15_2135at 2237.706 kb on + strand, within HP15_2136at 2237.831 kb on + strand, within HP15_2136at 2237.839 kb on - strand, within HP15_2136at 2238.002 kb on + strand, within HP15_2136at 2238.002 kb on + strand, within HP15_2136at 2238.061 kb on - strandat 2238.300 kb on + strand, within HP15_2137at 2238.308 kb on - strand, within HP15_2137at 2238.318 kb on + strand, within HP15_2137at 2238.368 kb on + strand, within HP15_2137at 2238.465 kb on + strand, within HP15_2137at 2238.500 kb on - strand, within HP15_2137at 2238.523 kb on + strand, within HP15_2137

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
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2,236,193 - -0.7
2,236,264 - HP15_2134 0.15 -0.1
2,236,283 + HP15_2134 0.17 -1.8
2,236,443 - HP15_2134 0.33 +0.0
2,236,463 - HP15_2134 0.35 -1.8
2,236,496 + HP15_2134 0.39 +0.4
2,236,660 + HP15_2134 0.55 -0.2
2,236,699 + HP15_2134 0.59 -0.3
2,236,834 + HP15_2134 0.72 -0.0
2,236,834 + HP15_2134 0.72 -0.2
2,236,842 - HP15_2134 0.73 +0.2
2,236,985 + HP15_2134 0.87 +0.1
2,237,224 + HP15_2135 0.22 +0.0
2,237,263 + HP15_2135 0.30 -0.9
2,237,312 + HP15_2135 0.40 -1.2
2,237,318 - HP15_2135 0.41 -0.1
2,237,338 - HP15_2135 0.45 -0.6
2,237,402 - HP15_2135 0.57 -0.3
2,237,406 - HP15_2135 0.58 -0.8
2,237,459 - HP15_2135 0.69 -0.3
2,237,495 - HP15_2135 0.76 -0.1
2,237,706 + HP15_2136 0.21 -0.2
2,237,831 + HP15_2136 0.49 +0.1
2,237,839 - HP15_2136 0.51 +0.4
2,238,002 + HP15_2136 0.87 +0.5
2,238,002 + HP15_2136 0.87 +0.0
2,238,061 - +1.4
2,238,300 + HP15_2137 0.21 -0.1
2,238,308 - HP15_2137 0.22 +0.8
2,238,318 + HP15_2137 0.24 +0.6
2,238,368 + HP15_2137 0.31 +0.1
2,238,465 + HP15_2137 0.45 -1.1
2,238,500 - HP15_2137 0.50 +0.3
2,238,523 + HP15_2137 0.53 -0.6

Or see this region's nucleotide sequence