Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2029 and HP15_2030 are separated by 16 nucleotides HP15_2030 and HP15_2031 are separated by 203 nucleotides HP15_2031 and HP15_2032 are separated by 0 nucleotides
HP15_2029: HP15_2029 - permease perM, at 2,129,258 to 2,130,337
_2029
HP15_2030: HP15_2030 - protein containing SirA-like domain, at 2,130,354 to 2,130,581
_2030
HP15_2031: HP15_2031 - putative Zn-dependent protease, contains TPR repeats, at 2,130,785 to 2,132,217
_2031
HP15_2032: HP15_2032 - quinolinate synthetase complex, A subunit, at 2,132,218 to 2,133,279
_2032
Position (kb)
2130
2131
2132
2133 Strain fitness (log2 ratio)
-1
0
1 at 2129.791 kb on + strand, within HP15_2029 at 2129.794 kb on - strand, within HP15_2029 at 2129.871 kb on + strand, within HP15_2029 at 2129.925 kb on - strand, within HP15_2029 at 2130.192 kb on - strand, within HP15_2029 at 2130.207 kb on + strand, within HP15_2029 at 2130.267 kb on + strand at 2130.663 kb on + strand at 2130.747 kb on - strand at 2130.803 kb on - strand at 2131.079 kb on - strand, within HP15_2031 at 2131.172 kb on - strand, within HP15_2031 at 2131.172 kb on - strand, within HP15_2031 at 2131.337 kb on - strand, within HP15_2031 at 2131.643 kb on + strand, within HP15_2031 at 2131.723 kb on - strand, within HP15_2031 at 2132.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,129,791 + HP15_2029 0.49 +1.0 2,129,794 - HP15_2029 0.50 +0.2 2,129,871 + HP15_2029 0.57 -1.7 2,129,925 - HP15_2029 0.62 +0.3 2,130,192 - HP15_2029 0.86 -0.8 2,130,207 + HP15_2029 0.88 -0.4 2,130,267 + -0.6 2,130,663 + -0.8 2,130,747 - +0.4 2,130,803 - -0.4 2,131,079 - HP15_2031 0.21 +0.3 2,131,172 - HP15_2031 0.27 -1.2 2,131,172 - HP15_2031 0.27 -0.2 2,131,337 - HP15_2031 0.39 -1.7 2,131,643 + HP15_2031 0.60 -1.0 2,131,723 - HP15_2031 0.65 -0.4 2,132,116 - -1.4
Or see this region's nucleotide sequence