Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2007 and HP15_2008 are separated by 131 nucleotides HP15_2008 and HP15_2009 overlap by 1 nucleotides HP15_2009 and HP15_2010 are separated by 268 nucleotides
HP15_2007: HP15_2007 - prophage lambda integrase, at 2,107,666 to 2,108,787
_2007
HP15_2008: HP15_2008 - conserved hypothetical protein, at 2,108,919 to 2,109,446
_2008
HP15_2009: HP15_2009 - conserved hypothetical protein, at 2,109,446 to 2,109,859
_2009
HP15_2010: HP15_2010 - sensor histidine kinase, at 2,110,128 to 2,111,972
_2010
Position (kb)
2108
2109
2110 Strain fitness (log2 ratio)
-1
0
1
2 at 2108.039 kb on - strand, within HP15_2007 at 2108.093 kb on + strand, within HP15_2007 at 2108.134 kb on + strand, within HP15_2007 at 2108.143 kb on - strand, within HP15_2007 at 2108.210 kb on + strand, within HP15_2007 at 2108.216 kb on + strand, within HP15_2007 at 2108.216 kb on + strand, within HP15_2007 at 2108.256 kb on - strand, within HP15_2007 at 2108.268 kb on - strand, within HP15_2007 at 2108.347 kb on + strand, within HP15_2007 at 2108.348 kb on - strand, within HP15_2007 at 2108.386 kb on + strand, within HP15_2007 at 2108.416 kb on - strand, within HP15_2007 at 2108.433 kb on - strand, within HP15_2007 at 2108.525 kb on + strand, within HP15_2007 at 2108.533 kb on + strand, within HP15_2007 at 2108.534 kb on - strand, within HP15_2007 at 2108.546 kb on + strand, within HP15_2007 at 2108.546 kb on - strand, within HP15_2007 at 2108.647 kb on - strand, within HP15_2007 at 2108.724 kb on + strand at 2108.738 kb on + strand at 2108.746 kb on - strand at 2108.999 kb on + strand, within HP15_2008 at 2109.152 kb on + strand, within HP15_2008 at 2109.269 kb on - strand, within HP15_2008 at 2109.845 kb on - strand at 2109.943 kb on + strand at 2109.951 kb on - strand at 2109.951 kb on - strand at 2110.058 kb on + strand at 2110.198 kb on + strand at 2110.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,108,039 - HP15_2007 0.33 -0.7 2,108,093 + HP15_2007 0.38 -0.1 2,108,134 + HP15_2007 0.42 -0.1 2,108,143 - HP15_2007 0.43 +0.4 2,108,210 + HP15_2007 0.48 +0.3 2,108,216 + HP15_2007 0.49 -0.2 2,108,216 + HP15_2007 0.49 -0.4 2,108,256 - HP15_2007 0.53 -0.3 2,108,268 - HP15_2007 0.54 -0.3 2,108,347 + HP15_2007 0.61 +0.3 2,108,348 - HP15_2007 0.61 +0.3 2,108,386 + HP15_2007 0.64 +0.3 2,108,416 - HP15_2007 0.67 -0.9 2,108,433 - HP15_2007 0.68 +2.7 2,108,525 + HP15_2007 0.77 -0.8 2,108,533 + HP15_2007 0.77 -0.3 2,108,534 - HP15_2007 0.77 -0.6 2,108,546 + HP15_2007 0.78 +0.1 2,108,546 - HP15_2007 0.78 -1.6 2,108,647 - HP15_2007 0.87 -0.0 2,108,724 + -0.1 2,108,738 + +0.2 2,108,746 - -1.4 2,108,999 + HP15_2008 0.15 -1.1 2,109,152 + HP15_2008 0.44 -1.1 2,109,269 - HP15_2008 0.66 +0.4 2,109,845 - -0.4 2,109,943 + -0.3 2,109,951 - -0.5 2,109,951 - +1.1 2,110,058 + -0.0 2,110,198 + +0.2 2,110,206 - -0.3
Or see this region's nucleotide sequence