Strain Fitness in Marinobacter adhaerens HP15 around HP15_2008

Experiment: m.b. Tetracycline 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2007 and HP15_2008 are separated by 131 nucleotidesHP15_2008 and HP15_2009 overlap by 1 nucleotidesHP15_2009 and HP15_2010 are separated by 268 nucleotides HP15_2007: HP15_2007 - prophage lambda integrase, at 2,107,666 to 2,108,787 _2007 HP15_2008: HP15_2008 - conserved hypothetical protein, at 2,108,919 to 2,109,446 _2008 HP15_2009: HP15_2009 - conserved hypothetical protein, at 2,109,446 to 2,109,859 _2009 HP15_2010: HP15_2010 - sensor histidine kinase, at 2,110,128 to 2,111,972 _2010 Position (kb) 2108 2109 2110Strain fitness (log2 ratio) -1 0 1 2at 2108.039 kb on - strand, within HP15_2007at 2108.093 kb on + strand, within HP15_2007at 2108.134 kb on + strand, within HP15_2007at 2108.143 kb on - strand, within HP15_2007at 2108.210 kb on + strand, within HP15_2007at 2108.216 kb on + strand, within HP15_2007at 2108.216 kb on + strand, within HP15_2007at 2108.256 kb on - strand, within HP15_2007at 2108.268 kb on - strand, within HP15_2007at 2108.347 kb on + strand, within HP15_2007at 2108.348 kb on - strand, within HP15_2007at 2108.386 kb on + strand, within HP15_2007at 2108.416 kb on - strand, within HP15_2007at 2108.433 kb on - strand, within HP15_2007at 2108.525 kb on + strand, within HP15_2007at 2108.533 kb on + strand, within HP15_2007at 2108.534 kb on - strand, within HP15_2007at 2108.546 kb on + strand, within HP15_2007at 2108.546 kb on - strand, within HP15_2007at 2108.647 kb on - strand, within HP15_2007at 2108.724 kb on + strandat 2108.738 kb on + strandat 2108.746 kb on - strandat 2108.999 kb on + strand, within HP15_2008at 2109.152 kb on + strand, within HP15_2008at 2109.269 kb on - strand, within HP15_2008at 2109.845 kb on - strandat 2109.943 kb on + strandat 2109.951 kb on - strandat 2109.951 kb on - strandat 2110.058 kb on + strandat 2110.198 kb on + strandat 2110.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
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2,108,039 - HP15_2007 0.33 -0.7
2,108,093 + HP15_2007 0.38 -0.1
2,108,134 + HP15_2007 0.42 -0.1
2,108,143 - HP15_2007 0.43 +0.4
2,108,210 + HP15_2007 0.48 +0.3
2,108,216 + HP15_2007 0.49 -0.2
2,108,216 + HP15_2007 0.49 -0.4
2,108,256 - HP15_2007 0.53 -0.3
2,108,268 - HP15_2007 0.54 -0.3
2,108,347 + HP15_2007 0.61 +0.3
2,108,348 - HP15_2007 0.61 +0.3
2,108,386 + HP15_2007 0.64 +0.3
2,108,416 - HP15_2007 0.67 -0.9
2,108,433 - HP15_2007 0.68 +2.7
2,108,525 + HP15_2007 0.77 -0.8
2,108,533 + HP15_2007 0.77 -0.3
2,108,534 - HP15_2007 0.77 -0.6
2,108,546 + HP15_2007 0.78 +0.1
2,108,546 - HP15_2007 0.78 -1.6
2,108,647 - HP15_2007 0.87 -0.0
2,108,724 + -0.1
2,108,738 + +0.2
2,108,746 - -1.4
2,108,999 + HP15_2008 0.15 -1.1
2,109,152 + HP15_2008 0.44 -1.1
2,109,269 - HP15_2008 0.66 +0.4
2,109,845 - -0.4
2,109,943 + -0.3
2,109,951 - -0.5
2,109,951 - +1.1
2,110,058 + -0.0
2,110,198 + +0.2
2,110,206 - -0.3

Or see this region's nucleotide sequence