Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20010

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
2,073,913	+		PGA1_c19990	0.55	+0.8
2,073,918	+		PGA1_c19990	0.56	-0.6
2,073,937	+		PGA1_c19990	0.57	-1.3
2,073,945	-		PGA1_c19990	0.58	-0.2
2,073,985	-		PGA1_c19990	0.61	+0.0
2,074,001	-		PGA1_c19990	0.62	-0.1
2,074,010	+		PGA1_c19990	0.63	-0.2
2,074,044	+		PGA1_c19990	0.66	+0.1
2,074,044	+		PGA1_c19990	0.66	-0.7
2,074,044	+		PGA1_c19990	0.66	-0.2
2,074,049	+		PGA1_c19990	0.66	+0.2
2,074,052	-		PGA1_c19990	0.67	+0.2
2,074,062	-		PGA1_c19990	0.67	-2.4
2,074,123	+		PGA1_c19990	0.73	-0.1
2,074,140	+		PGA1_c19990	0.74	-0.7
2,074,148	-		PGA1_c19990	0.75	+0.0
2,074,172	+		PGA1_c19990	0.77	+0.9
2,074,185	-		PGA1_c19990	0.78	-0.9
2,074,196	-		PGA1_c19990	0.79	-0.0
2,074,301	-		PGA1_c19990	0.87	-0.6
2,074,359	+				+0.6
2,074,364	+				+0.2
2,074,367	-				+0.0
2,074,374	-				+0.5
2,074,402	-				-0.7
2,074,442	+				-0.9
2,074,457	-				-0.3
2,074,476	+				+1.0
2,074,476	+				+0.3
2,074,484	-				+0.3
2,074,484	-				+0.0
2,074,508	+				-0.6
2,074,697	+				+0.7
2,074,732	+		PGA1_c20000	0.53	+0.6
2,074,767	+		PGA1_c20000	0.65	-0.1
2,074,840	-				+0.7
2,074,878	+				+0.3
2,075,004	+				-1.0
2,075,004	+				+0.5
2,075,004	+				-1.5
2,075,004	+				-0.2
2,075,004	+				+0.4
2,075,006	+				+0.8
2,075,012	-				-2.7
2,075,012	-				+1.2
2,075,014	-				+0.8
2,075,021	+				+0.7
2,075,041	-				+1.1
2,075,063	+				-0.2
2,075,068	+				+0.6
2,075,073	+				+0.9
2,075,073	+				-0.3
2,075,076	-				+0.6
2,075,076	-				+0.0
2,075,120	+				+0.3
2,075,137	+				+0.1
2,075,137	+				+1.6
2,075,137	+				+1.3
2,075,137	+				+0.3
2,075,137	+				-0.2
2,075,145	-		PGA1_c20010	0.10	+1.1
2,075,145	-		PGA1_c20010	0.10	+0.7
2,075,145	-		PGA1_c20010	0.10	+0.2
2,075,145	-		PGA1_c20010	0.10	+0.0
2,075,145	-		PGA1_c20010	0.10	+0.1
2,075,150	+		PGA1_c20010	0.10	+0.7
2,075,191	-		PGA1_c20010	0.12	+0.3
2,075,249	-		PGA1_c20010	0.14	+0.4
2,075,260	+		PGA1_c20010	0.14	-0.1
2,075,268	-		PGA1_c20010	0.15	+0.9
2,075,310	+		PGA1_c20010	0.16	+0.8
2,075,318	-		PGA1_c20010	0.16	+0.7
2,075,318	-		PGA1_c20010	0.16	+0.6
2,075,337	-		PGA1_c20010	0.17	+0.4
2,075,354	+		PGA1_c20010	0.18	+0.4
2,075,354	+		PGA1_c20010	0.18	+0.1
2,075,430	-		PGA1_c20010	0.20	+0.2
2,075,438	+		PGA1_c20010	0.21	-0.1
2,075,512	+		PGA1_c20010	0.23	+0.4
2,075,537	+		PGA1_c20010	0.24	+0.8
2,075,580	-		PGA1_c20010	0.26	+0.0
2,075,638	-		PGA1_c20010	0.28	+1.1
2,075,679	-		PGA1_c20010	0.29	-0.6
2,075,687	+		PGA1_c20010	0.29	-0.1
2,075,695	-		PGA1_c20010	0.30	+0.8
2,075,695	-		PGA1_c20010	0.30	+1.6
2,075,695	-		PGA1_c20010	0.30	+0.4
2,075,695	-		PGA1_c20010	0.30	-1.2
2,075,705	-		PGA1_c20010	0.30	+1.4
2,075,817	+		PGA1_c20010	0.34	+0.9
2,075,895	+		PGA1_c20010	0.37	+0.2
2,075,895	+		PGA1_c20010	0.37	+0.3
2,075,914	-		PGA1_c20010	0.37	+0.3
2,075,979	+		PGA1_c20010	0.40	+0.3
2,075,979	+		PGA1_c20010	0.40	-1.3
2,075,979	-		PGA1_c20010	0.40	+0.6
2,075,987	-		PGA1_c20010	0.40	-0.9
2,076,019	-		PGA1_c20010	0.41	-0.0
2,076,074	-		PGA1_c20010	0.43	+0.9
2,076,091	-		PGA1_c20010	0.44	-2.1
2,076,116	+		PGA1_c20010	0.45	-1.3
2,076,151	-		PGA1_c20010	0.46	+0.5
2,076,151	-		PGA1_c20010	0.46	-1.1
2,076,203	-		PGA1_c20010	0.48	-1.4
2,076,225	+		PGA1_c20010	0.49	-0.3
2,076,232	-		PGA1_c20010	0.49	+0.4
2,076,238	-		PGA1_c20010	0.49	+1.2
2,076,268	+		PGA1_c20010	0.50	+0.3
2,076,273	+		PGA1_c20010	0.50	+0.1
2,076,300	+		PGA1_c20010	0.51	+0.3
2,076,300	+		PGA1_c20010	0.51	-0.1
2,076,308	-		PGA1_c20010	0.51	+0.6
2,076,318	-		PGA1_c20010	0.52	+0.5
2,076,328	+		PGA1_c20010	0.52	+1.3
2,076,328	+		PGA1_c20010	0.52	+1.2
2,076,328	+		PGA1_c20010	0.52	-0.4
2,076,328	+		PGA1_c20010	0.52	+0.7
2,076,328	+		PGA1_c20010	0.52	+0.0
2,076,335	+		PGA1_c20010	0.52	+0.6
2,076,336	-		PGA1_c20010	0.52	+0.2
2,076,404	+		PGA1_c20010	0.55	+0.4
2,076,489	+		PGA1_c20010	0.58	-1.0
2,076,494	+		PGA1_c20010	0.58	+0.6
2,076,494	+		PGA1_c20010	0.58	+1.0
2,076,510	-		PGA1_c20010	0.59	-1.7
2,076,614	-		PGA1_c20010	0.62	-0.2
2,076,624	-		PGA1_c20010	0.63	+0.4
2,076,631	-		PGA1_c20010	0.63	-0.5
2,076,645	+		PGA1_c20010	0.63	+0.1
2,076,734	+		PGA1_c20010	0.67	+0.1
2,076,892	-		PGA1_c20010	0.72	-0.4
2,076,901	+		PGA1_c20010	0.73	-0.3
2,076,901	+		PGA1_c20010	0.73	+0.1
2,076,935	-		PGA1_c20010	0.74	-0.2
2,077,050	+		PGA1_c20010	0.78	-0.3
2,077,073	+		PGA1_c20010	0.79	-0.4
2,077,080	-		PGA1_c20010	0.79	+0.5
2,077,084	+		PGA1_c20010	0.79	+1.0
2,077,086	-		PGA1_c20010	0.79	+0.3
2,077,122	-		PGA1_c20010	0.80	-0.1
2,077,126	-		PGA1_c20010	0.81	+0.6
2,077,160	+		PGA1_c20010	0.82	+0.2
2,077,168	-		PGA1_c20010	0.82	+0.7
2,077,170	+		PGA1_c20010	0.82	+0.8
2,077,178	-		PGA1_c20010	0.82	-0.8
2,077,316	-		PGA1_c20010	0.87	+1.0
2,077,326	-		PGA1_c20010	0.88	+0.0
2,077,331	+		PGA1_c20010	0.88	+0.1
2,077,331	+		PGA1_c20010	0.88	+0.6
2,077,331	+		PGA1_c20010	0.88	+0.9
2,077,339	-		PGA1_c20010	0.88	+0.0
2,077,339	-		PGA1_c20010	0.88	+0.8
2,077,397	+				-0.4
2,077,475	+				+0.1
2,077,483	-				+0.6
2,077,530	+				+0.2
2,077,549	-				+0.8
2,077,549	-				+1.2
2,077,549	-				-0.1
2,077,573	+				-0.3
2,077,573	+				-0.6
2,077,573	+				-0.6
2,077,573	+				-0.3
2,077,581	-				+0.4
2,077,581	-				-0.1
2,077,581	-				+0.7
2,077,581	-				+0.4
2,077,684	-				+0.1
2,077,688	+				-1.6
2,077,701	-				+0.4
2,077,742	-				-0.5
2,077,765	-				+0.1
2,077,814	+				+0.3
2,077,824	+				-0.7
2,077,828	+				-0.3
2,077,832	-				+1.3
2,077,832	-				+0.1
2,077,832	-				-0.7
2,077,854	-				-0.5
2,077,869	-				-0.6
2,077,879	-				+0.3
2,077,904	+				-0.4
2,077,904	+				-1.1
2,077,912	-				-0.9
2,077,963	-				+0.7
2,077,990	+				+0.9
2,077,990	+				-0.4
2,077,998	-				-0.0
2,077,998	-				+0.9
2,077,998	-				-0.1
2,077,998	-				-0.9
2,077,998	-				-0.2
2,077,998	-				+0.3
2,077,998	-				-1.1
2,077,998	-				+0.3
2,078,026	+				+0.1
2,078,026	+				+0.1
2,078,026	-				-0.4
2,078,034	-				+0.6
2,078,034	-				+1.0
2,078,061	-				-0.1
2,078,068	-				+0.3
2,078,107	+				-0.6
2,078,107	+				+0.9
2,078,107	+				+1.1
2,078,107	+				-0.5
2,078,107	+				-0.1
2,078,109	+				-1.5
2,078,115	-				-0.4
2,078,115	-				-1.4
2,078,115	-				-0.3
2,078,115	-				+1.1
2,078,115	-				-0.1
2,078,132	-				+0.4
2,078,182	+				-0.4
2,078,182	+				-0.5
2,078,182	+				+1.0
2,078,187	+				+0.1
2,078,190	-				-0.2
2,078,190	-				-0.1
2,078,190	-				-1.3
2,078,190	-				-0.6
2,078,190	-				-1.9
2,078,222	-				-0.3
2,078,235	+				-1.2
2,078,242	-				-0.8
2,078,307	-				-0.0
2,078,317	+				+0.8
2,078,323	-				+0.9
2,078,333	+				+0.1
2,078,348	+				-0.4
2,078,388	+		PGA1_c20020	0.16	-0.7
2,078,396	-		PGA1_c20020	0.18	-0.2
2,078,396	-		PGA1_c20020	0.18	-0.7
2,078,396	-		PGA1_c20020	0.18	-0.2
2,078,396	-		PGA1_c20020	0.18	-1.2
2,078,396	-		PGA1_c20020	0.18	+1.8
2,078,396	-		PGA1_c20020	0.18	-0.5
2,078,396	-		PGA1_c20020	0.18	-1.0
2,078,396	-		PGA1_c20020	0.18	-1.0
2,078,416	-		PGA1_c20020	0.24	-0.7
2,078,522	+		PGA1_c20020	0.56	+0.8
2,078,541	+		PGA1_c20020	0.61	+0.8
2,078,578	-		PGA1_c20020	0.72	+1.5
2,078,578	-		PGA1_c20020	0.72	+0.4
2,078,642	+				+0.5
2,078,644	-				+0.7
2,078,650	-				+1.2