Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1702 and HP15_1703 are separated by 26 nucleotides HP15_1703 and HP15_1704 are separated by 74 nucleotides HP15_1704 and HP15_1705 are separated by 145 nucleotides
HP15_1702: HP15_1702 - protein containing DUF785, at 1,796,452 to 1,797,051
_1702
HP15_1703: HP15_1703 - acyl carrier protein phosphodiesterase, at 1,797,078 to 1,797,602
_1703
HP15_1704: HP15_1704 - conserved hypothetical protein, secreted, at 1,797,677 to 1,798,219
_1704
HP15_1705: HP15_1705 - potassium uptake protein, TrkH family, at 1,798,365 to 1,799,882
_1705
Position (kb)
1797
1798 Strain fitness (log2 ratio)
-2
-1
0
1 at 1796.081 kb on + strand at 1796.406 kb on - strand at 1796.972 kb on - strand, within HP15_1702 at 1796.972 kb on - strand, within HP15_1702 at 1797.216 kb on + strand, within HP15_1703 at 1797.261 kb on - strand, within HP15_1703 at 1797.465 kb on - strand, within HP15_1703 at 1797.614 kb on - strand at 1798.103 kb on + strand, within HP15_1704 at 1798.108 kb on + strand, within HP15_1704 at 1798.111 kb on - strand, within HP15_1704 at 1798.113 kb on + strand, within HP15_1704 at 1798.121 kb on - strand, within HP15_1704 at 1798.254 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.365 kb on - strand at 1798.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 1,796,081 + -0.0 1,796,406 - -0.2 1,796,972 - HP15_1702 0.87 -0.6 1,796,972 - HP15_1702 0.87 -0.2 1,797,216 + HP15_1703 0.26 +0.0 1,797,261 - HP15_1703 0.35 -2.0 1,797,465 - HP15_1703 0.74 -0.4 1,797,614 - -0.2 1,798,103 + HP15_1704 0.78 +0.4 1,798,108 + HP15_1704 0.79 +1.1 1,798,111 - HP15_1704 0.80 -0.5 1,798,113 + HP15_1704 0.80 -0.0 1,798,121 - HP15_1704 0.82 -0.4 1,798,254 + +0.4 1,798,357 + +0.0 1,798,357 + -0.1 1,798,357 + +0.9 1,798,357 + +0.6 1,798,357 + -0.4 1,798,357 + -0.1 1,798,357 + +0.2 1,798,357 + +0.6 1,798,365 - +0.3 1,798,365 - -0.2
Or see this region's nucleotide sequence