Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1653 and HP15_1654 are separated by 46 nucleotides HP15_1654 and HP15_1655 are separated by 225 nucleotides HP15_1655 and HP15_1656 are separated by 26 nucleotides HP15_1656 and HP15_1657 overlap by 14 nucleotides
HP15_1653: HP15_1653 - protein containing DUF1348, at 1,749,613 to 1,750,083
_1653
HP15_1654: HP15_1654 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 1,750,130 to 1,750,690
_1654
HP15_1655: HP15_1655 - transcriptional regulator, TetR family, at 1,750,916 to 1,751,485
_1655
HP15_1656: HP15_1656 - dihydrolipoamide dehydrogenase-like protein, at 1,751,512 to 1,751,757
_1656
HP15_1657: HP15_1657 - dihydrolipoamide dehydrogenase, at 1,751,744 to 1,753,165
_1657
Position (kb) 1750
1751
1752 Strain fitness (log2 ratio) -1
0
1 at 1749.973 kb on - strand, within HP15_1653 at 1749.990 kb on + strand, within HP15_1653 at 1750.087 kb on - strand at 1750.087 kb on - strand at 1750.123 kb on + strand at 1750.131 kb on - strand at 1750.133 kb on + strand at 1750.171 kb on - strand at 1750.204 kb on + strand, within HP15_1654 at 1750.204 kb on - strand, within HP15_1654 at 1750.221 kb on - strand, within HP15_1654 at 1750.356 kb on - strand, within HP15_1654 at 1750.383 kb on - strand, within HP15_1654 at 1750.598 kb on - strand, within HP15_1654 at 1750.635 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.810 kb on - strand at 1750.891 kb on - strand at 1751.058 kb on + strand, within HP15_1655 at 1751.351 kb on - strand, within HP15_1655 at 1751.438 kb on + strand at 1751.541 kb on + strand, within HP15_1656 at 1751.582 kb on - strand, within HP15_1656 at 1751.614 kb on + strand, within HP15_1656 at 1751.673 kb on - strand, within HP15_1656 at 1751.867 kb on - strand at 1751.872 kb on + strand at 1751.892 kb on + strand, within HP15_1657 at 1751.892 kb on + strand, within HP15_1657 at 1751.892 kb on + strand, within HP15_1657 at 1751.892 kb on + strand, within HP15_1657 at 1751.892 kb on + strand, within HP15_1657 at 1751.892 kb on + strand, within HP15_1657 at 1751.898 kb on + strand, within HP15_1657 at 1751.900 kb on - strand, within HP15_1657 at 1751.900 kb on - strand, within HP15_1657 at 1751.900 kb on - strand, within HP15_1657 at 1751.906 kb on - strand, within HP15_1657 at 1751.963 kb on + strand, within HP15_1657 at 1751.963 kb on + strand, within HP15_1657 at 1751.971 kb on - strand, within HP15_1657 at 1751.987 kb on - strand, within HP15_1657 at 1752.130 kb on - strand, within HP15_1657 at 1752.266 kb on + strand, within HP15_1657 at 1752.274 kb on - strand, within HP15_1657 at 1752.376 kb on + strand, within HP15_1657 at 1752.430 kb on + strand, within HP15_1657
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 1,749,973 - HP15_1653 0.76 +0.3 1,749,990 + HP15_1653 0.80 +0.1 1,750,087 - -0.1 1,750,087 - -0.0 1,750,123 + -0.4 1,750,131 - -0.9 1,750,133 + -0.3 1,750,171 - -0.5 1,750,204 + HP15_1654 0.13 +0.1 1,750,204 - HP15_1654 0.13 +0.0 1,750,221 - HP15_1654 0.16 +0.3 1,750,356 - HP15_1654 0.40 -0.1 1,750,383 - HP15_1654 0.45 -0.3 1,750,598 - HP15_1654 0.83 -0.0 1,750,635 + +0.1 1,750,802 + +0.1 1,750,802 + -0.1 1,750,802 + -0.3 1,750,802 + +0.3 1,750,810 - -0.0 1,750,891 - -0.4 1,751,058 + HP15_1655 0.25 +0.2 1,751,351 - HP15_1655 0.76 -1.3 1,751,438 + -0.3 1,751,541 + HP15_1656 0.12 +0.3 1,751,582 - HP15_1656 0.28 +0.3 1,751,614 + HP15_1656 0.41 -0.7 1,751,673 - HP15_1656 0.65 +0.3 1,751,867 - -0.0 1,751,872 + -0.1 1,751,892 + HP15_1657 0.10 +0.4 1,751,892 + HP15_1657 0.10 -0.2 1,751,892 + HP15_1657 0.10 -0.0 1,751,892 + HP15_1657 0.10 -0.1 1,751,892 + HP15_1657 0.10 +0.4 1,751,892 + HP15_1657 0.10 +0.0 1,751,898 + HP15_1657 0.11 -0.1 1,751,900 - HP15_1657 0.11 +1.5 1,751,900 - HP15_1657 0.11 -0.1 1,751,900 - HP15_1657 0.11 -0.3 1,751,906 - HP15_1657 0.11 -0.1 1,751,963 + HP15_1657 0.15 -0.1 1,751,963 + HP15_1657 0.15 -0.1 1,751,971 - HP15_1657 0.16 +0.0 1,751,987 - HP15_1657 0.17 +0.4 1,752,130 - HP15_1657 0.27 +0.7 1,752,266 + HP15_1657 0.37 -0.3 1,752,274 - HP15_1657 0.37 -0.2 1,752,376 + HP15_1657 0.44 +0.4 1,752,430 + HP15_1657 0.48 -0.3
Or see this region's nucleotide sequence