Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1613 and HP15_1614 overlap by 8 nucleotides HP15_1614 and HP15_1615 are separated by 137 nucleotides
HP15_1613: HP15_1613 - sensory box histidine kinase/response regulator, at 1,708,810 to 1,710,753
_1613
HP15_1614: HP15_1614 - conserved hypothetical protein, at 1,710,746 to 1,711,618
_1614
HP15_1615: HP15_1615 - TonB-dependent receptor, plug, at 1,711,756 to 1,713,906
_1615
Position (kb)
1710
1711
1712 Strain fitness (log2 ratio)
-1
0
1 at 1709.760 kb on - strand, within HP15_1613 at 1709.819 kb on + strand, within HP15_1613 at 1709.819 kb on - strand, within HP15_1613 at 1709.827 kb on - strand, within HP15_1613 at 1709.829 kb on - strand, within HP15_1613 at 1709.888 kb on + strand, within HP15_1613 at 1709.888 kb on - strand, within HP15_1613 at 1709.890 kb on + strand, within HP15_1613 at 1709.890 kb on + strand, within HP15_1613 at 1709.898 kb on - strand, within HP15_1613 at 1709.915 kb on - strand, within HP15_1613 at 1710.001 kb on - strand, within HP15_1613 at 1710.008 kb on + strand, within HP15_1613 at 1710.016 kb on - strand, within HP15_1613 at 1710.216 kb on + strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.301 kb on - strand, within HP15_1613 at 1710.418 kb on + strand, within HP15_1613 at 1710.423 kb on + strand, within HP15_1613 at 1710.648 kb on - strand at 1710.655 kb on - strand at 1710.751 kb on + strand at 1710.869 kb on + strand, within HP15_1614 at 1710.990 kb on + strand, within HP15_1614 at 1711.097 kb on + strand, within HP15_1614 at 1711.219 kb on + strand, within HP15_1614 at 1711.291 kb on - strand, within HP15_1614 at 1711.313 kb on + strand, within HP15_1614 at 1711.319 kb on - strand, within HP15_1614 at 1711.626 kb on - strand at 1711.717 kb on + strand at 1711.718 kb on - strand at 1711.735 kb on - strand at 1711.888 kb on - strand at 1711.938 kb on + strand at 1712.092 kb on + strand, within HP15_1615 at 1712.114 kb on - strand, within HP15_1615 at 1712.116 kb on + strand, within HP15_1615 at 1712.176 kb on + strand, within HP15_1615 at 1712.325 kb on + strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.365 kb on + strand, within HP15_1615 at 1712.465 kb on + strand, within HP15_1615 at 1712.612 kb on + strand, within HP15_1615
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 1,709,760 - HP15_1613 0.49 +0.1 1,709,819 + HP15_1613 0.52 +0.0 1,709,819 - HP15_1613 0.52 +1.1 1,709,827 - HP15_1613 0.52 -0.3 1,709,829 - HP15_1613 0.52 +0.9 1,709,888 + HP15_1613 0.55 +0.1 1,709,888 - HP15_1613 0.55 +0.3 1,709,890 + HP15_1613 0.56 +0.5 1,709,890 + HP15_1613 0.56 -0.7 1,709,898 - HP15_1613 0.56 -0.4 1,709,915 - HP15_1613 0.57 -0.2 1,710,001 - HP15_1613 0.61 -0.4 1,710,008 + HP15_1613 0.62 +0.4 1,710,016 - HP15_1613 0.62 +0.0 1,710,216 + HP15_1613 0.72 -0.1 1,710,291 - HP15_1613 0.76 +0.2 1,710,291 - HP15_1613 0.76 +0.4 1,710,291 - HP15_1613 0.76 -0.4 1,710,301 - HP15_1613 0.77 -0.8 1,710,418 + HP15_1613 0.83 +0.3 1,710,423 + HP15_1613 0.83 +0.0 1,710,648 - +0.9 1,710,655 - +0.4 1,710,751 + -0.2 1,710,869 + HP15_1614 0.14 +0.9 1,710,990 + HP15_1614 0.28 -0.4 1,711,097 + HP15_1614 0.40 -0.9 1,711,219 + HP15_1614 0.54 -0.6 1,711,291 - HP15_1614 0.62 -0.2 1,711,313 + HP15_1614 0.65 +1.7 1,711,319 - HP15_1614 0.66 -1.3 1,711,626 - -0.4 1,711,717 + -0.8 1,711,718 - -0.4 1,711,735 - -0.1 1,711,888 - -0.6 1,711,938 + +0.9 1,712,092 + HP15_1615 0.16 -0.1 1,712,114 - HP15_1615 0.17 -0.3 1,712,116 + HP15_1615 0.17 -0.1 1,712,176 + HP15_1615 0.20 -0.4 1,712,325 + HP15_1615 0.26 -0.5 1,712,333 - HP15_1615 0.27 -0.3 1,712,333 - HP15_1615 0.27 -0.3 1,712,333 - HP15_1615 0.27 -0.4 1,712,333 - HP15_1615 0.27 +0.0 1,712,365 + HP15_1615 0.28 -0.3 1,712,465 + HP15_1615 0.33 +0.1 1,712,612 + HP15_1615 0.40 -0.4
Or see this region's nucleotide sequence