Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_159 and HP15_160 are separated by 1 nucleotides HP15_160 and HP15_161 are separated by 79 nucleotides HP15_161 and HP15_162 are separated by 659 nucleotides HP15_162 and HP15_163 are separated by 68 nucleotides
HP15_159: HP15_159 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 157,287 to 158,009
_159
HP15_160: HP15_160 - secreted protein containing DUF411, at 158,011 to 158,514
_160
HP15_161: HP15_161 - secreted protein, at 158,594 to 158,857
_161
HP15_162: HP15_162 - hypothetical protein, at 159,517 to 159,714
_162
HP15_163: HP15_163 - cation efflux family protein, at 159,783 to 160,688
_163
Position (kb) 158
159 Strain fitness (log2 ratio) -1
0
1 at 157.627 kb on - strand, within HP15_159 at 157.627 kb on - strand, within HP15_159 at 157.644 kb on + strand, within HP15_159 at 157.704 kb on - strand, within HP15_159 at 157.713 kb on - strand, within HP15_159 at 157.760 kb on + strand, within HP15_159 at 157.869 kb on - strand, within HP15_159 at 157.872 kb on + strand, within HP15_159 at 157.872 kb on + strand, within HP15_159 at 157.894 kb on + strand, within HP15_159 at 157.939 kb on - strand at 157.961 kb on - strand at 157.985 kb on - strand at 158.025 kb on + strand at 158.188 kb on - strand, within HP15_160 at 158.293 kb on - strand, within HP15_160 at 158.316 kb on + strand, within HP15_160 at 158.340 kb on + strand, within HP15_160 at 158.340 kb on + strand, within HP15_160 at 158.340 kb on + strand, within HP15_160 at 158.348 kb on - strand, within HP15_160 at 158.377 kb on + strand, within HP15_160 at 158.387 kb on + strand, within HP15_160 at 158.410 kb on - strand, within HP15_160 at 158.439 kb on - strand, within HP15_160 at 158.552 kb on - strand at 158.591 kb on - strand at 158.652 kb on + strand, within HP15_161 at 158.775 kb on - strand, within HP15_161 at 158.815 kb on + strand, within HP15_161 at 158.815 kb on + strand, within HP15_161 at 158.818 kb on - strand, within HP15_161 at 158.873 kb on + strand at 158.972 kb on + strand at 159.035 kb on - strand at 159.037 kb on + strand at 159.040 kb on - strand at 159.066 kb on + strand at 159.074 kb on - strand at 159.119 kb on - strand at 159.129 kb on - strand at 159.185 kb on - strand at 159.214 kb on + strand at 159.217 kb on - strand at 159.222 kb on - strand at 159.260 kb on + strand at 159.310 kb on + strand at 159.361 kb on + strand at 159.393 kb on + strand at 159.411 kb on - strand at 159.459 kb on - strand at 159.543 kb on + strand, within HP15_162 at 159.586 kb on + strand, within HP15_162 at 159.594 kb on - strand, within HP15_162 at 159.713 kb on + strand at 159.753 kb on + strand at 159.777 kb on - strand at 159.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 157,627 - HP15_159 0.47 +0.0 157,627 - HP15_159 0.47 -0.4 157,644 + HP15_159 0.49 +0.2 157,704 - HP15_159 0.58 -0.1 157,713 - HP15_159 0.59 -0.1 157,760 + HP15_159 0.65 +1.1 157,869 - HP15_159 0.80 +0.2 157,872 + HP15_159 0.81 -0.1 157,872 + HP15_159 0.81 -0.1 157,894 + HP15_159 0.84 +0.0 157,939 - +0.0 157,961 - -0.2 157,985 - -0.4 158,025 + -0.9 158,188 - HP15_160 0.35 -0.0 158,293 - HP15_160 0.56 +1.3 158,316 + HP15_160 0.61 -0.2 158,340 + HP15_160 0.65 +0.0 158,340 + HP15_160 0.65 -0.4 158,340 + HP15_160 0.65 +0.7 158,348 - HP15_160 0.67 -0.4 158,377 + HP15_160 0.73 -0.3 158,387 + HP15_160 0.75 +0.2 158,410 - HP15_160 0.79 -0.6 158,439 - HP15_160 0.85 -0.0 158,552 - +0.4 158,591 - -0.5 158,652 + HP15_161 0.22 -0.6 158,775 - HP15_161 0.69 -0.5 158,815 + HP15_161 0.84 -0.8 158,815 + HP15_161 0.84 -0.0 158,818 - HP15_161 0.85 -1.2 158,873 + +0.5 158,972 + +0.9 159,035 - +1.0 159,037 + -0.7 159,040 - -0.0 159,066 + +0.2 159,074 - -0.1 159,119 - +0.3 159,129 - +0.1 159,185 - +0.2 159,214 + +0.2 159,217 - +0.2 159,222 - -0.2 159,260 + +0.1 159,310 + +0.4 159,361 + -0.8 159,393 + +0.3 159,411 - -0.6 159,459 - +1.4 159,543 + HP15_162 0.13 -0.2 159,586 + HP15_162 0.35 +0.1 159,594 - HP15_162 0.39 +0.0 159,713 + +0.5 159,753 + +1.6 159,777 - -1.4 159,817 - -0.1
Or see this region's nucleotide sequence