Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_156 and HP15_157 are separated by 389 nucleotides HP15_157 and HP15_158 are separated by 186 nucleotides HP15_158 and HP15_159 are separated by 60 nucleotides HP15_159 and HP15_160 are separated by 1 nucleotides
HP15_156: HP15_156 - conserved hypothetical protein, at 155,680 to 155,997
_156
HP15_157: HP15_157 - conserved hypothetical protein, at 156,387 to 156,779
_157
HP15_158: HP15_158 - protein MerR-like protein, at 156,966 to 157,226
_158
HP15_159: HP15_159 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 157,287 to 158,009
_159
HP15_160: HP15_160 - secreted protein containing DUF411, at 158,011 to 158,514
_160
Position (kb) 156
157
158 Strain fitness (log2 ratio) -1
0
1
2 at 155.999 kb on - strand at 155.999 kb on - strand at 156.004 kb on - strand at 156.009 kb on - strand at 156.022 kb on - strand at 156.048 kb on + strand at 156.156 kb on + strand at 156.156 kb on + strand at 156.187 kb on + strand at 156.280 kb on + strand at 156.280 kb on + strand at 156.288 kb on - strand at 156.316 kb on - strand at 156.343 kb on - strand at 156.381 kb on + strand at 156.671 kb on + strand, within HP15_157 at 156.729 kb on - strand, within HP15_157 at 156.729 kb on - strand, within HP15_157 at 156.731 kb on + strand, within HP15_157 at 156.739 kb on - strand, within HP15_157 at 156.741 kb on + strand at 156.749 kb on - strand at 156.824 kb on + strand at 156.845 kb on - strand at 156.949 kb on - strand at 156.949 kb on - strand at 157.120 kb on - strand, within HP15_158 at 157.120 kb on - strand, within HP15_158 at 157.122 kb on + strand, within HP15_158 at 157.312 kb on + strand at 157.421 kb on + strand, within HP15_159 at 157.458 kb on + strand, within HP15_159 at 157.549 kb on - strand, within HP15_159 at 157.556 kb on - strand, within HP15_159 at 157.571 kb on + strand, within HP15_159 at 157.571 kb on + strand, within HP15_159 at 157.627 kb on - strand, within HP15_159 at 157.627 kb on - strand, within HP15_159 at 157.644 kb on + strand, within HP15_159 at 157.704 kb on - strand, within HP15_159 at 157.713 kb on - strand, within HP15_159 at 157.760 kb on + strand, within HP15_159 at 157.869 kb on - strand, within HP15_159 at 157.872 kb on + strand, within HP15_159 at 157.872 kb on + strand, within HP15_159 at 157.894 kb on + strand, within HP15_159 at 157.939 kb on - strand at 157.961 kb on - strand at 157.985 kb on - strand at 158.025 kb on + strand at 158.188 kb on - strand, within HP15_160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 155,999 - -0.1 155,999 - -1.1 156,004 - -0.8 156,009 - -1.2 156,022 - +0.3 156,048 + +1.7 156,156 + +0.1 156,156 + -1.4 156,187 + -0.1 156,280 + -0.0 156,280 + -0.1 156,288 - -0.6 156,316 - -0.2 156,343 - +2.0 156,381 + -0.5 156,671 + HP15_157 0.72 -0.3 156,729 - HP15_157 0.87 -0.1 156,729 - HP15_157 0.87 -0.0 156,731 + HP15_157 0.88 +0.4 156,739 - HP15_157 0.90 -0.4 156,741 + -0.2 156,749 - -0.1 156,824 + +0.8 156,845 - +0.5 156,949 - -0.2 156,949 - +0.1 157,120 - HP15_158 0.59 +0.0 157,120 - HP15_158 0.59 -0.1 157,122 + HP15_158 0.60 -0.8 157,312 + -0.3 157,421 + HP15_159 0.19 +0.2 157,458 + HP15_159 0.24 -0.0 157,549 - HP15_159 0.36 +0.1 157,556 - HP15_159 0.37 -0.8 157,571 + HP15_159 0.39 -0.2 157,571 + HP15_159 0.39 +0.1 157,627 - HP15_159 0.47 +0.0 157,627 - HP15_159 0.47 -0.4 157,644 + HP15_159 0.49 +0.2 157,704 - HP15_159 0.58 -0.1 157,713 - HP15_159 0.59 -0.1 157,760 + HP15_159 0.65 +1.1 157,869 - HP15_159 0.80 +0.2 157,872 + HP15_159 0.81 -0.1 157,872 + HP15_159 0.81 -0.1 157,894 + HP15_159 0.84 +0.0 157,939 - +0.0 157,961 - -0.2 157,985 - -0.4 158,025 + -0.9 158,188 - HP15_160 0.35 -0.0
Or see this region's nucleotide sequence