Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1419 and HP15_1420 are separated by 153 nucleotides HP15_1420 and HP15_1421 overlap by 1 nucleotides HP15_1421 and HP15_1422 overlap by 4 nucleotides
HP15_1419: HP15_1419 - ABC transporter periplasmic amino acid-binding protein, at 1,503,078 to 1,503,896
_1419
HP15_1420: HP15_1420 - putative amino acid ABC transporter permease protein, at 1,504,050 to 1,504,715
_1420
HP15_1421: HP15_1421 - ABC transporter, membrane spanning protein, at 1,504,715 to 1,505,368
_1421
HP15_1422: HP15_1422 - amino acid ABC transporter ATP-binding protein, at 1,505,365 to 1,506,087
_1422
Position (kb)
1504
1505 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1503.076 kb on - strand at 1503.125 kb on - strand at 1503.174 kb on + strand, within HP15_1419 at 1503.294 kb on - strand, within HP15_1419 at 1503.294 kb on - strand, within HP15_1419 at 1503.319 kb on - strand, within HP15_1419 at 1503.390 kb on - strand, within HP15_1419 at 1503.392 kb on + strand, within HP15_1419 at 1503.413 kb on - strand, within HP15_1419 at 1503.471 kb on - strand, within HP15_1419 at 1503.510 kb on - strand, within HP15_1419 at 1503.536 kb on - strand, within HP15_1419 at 1503.623 kb on + strand, within HP15_1419 at 1503.703 kb on - strand, within HP15_1419 at 1503.703 kb on - strand, within HP15_1419 at 1503.778 kb on + strand, within HP15_1419 at 1503.818 kb on + strand at 1504.008 kb on - strand at 1504.008 kb on - strand at 1504.100 kb on + strand at 1504.122 kb on - strand, within HP15_1420 at 1504.251 kb on - strand, within HP15_1420 at 1504.334 kb on - strand, within HP15_1420 at 1504.417 kb on - strand, within HP15_1420 at 1504.443 kb on + strand, within HP15_1420 at 1504.523 kb on - strand, within HP15_1420 at 1504.680 kb on - strand at 1504.755 kb on + strand at 1504.763 kb on - strand at 1504.767 kb on - strand at 1504.803 kb on + strand, within HP15_1421 at 1504.916 kb on - strand, within HP15_1421 at 1504.916 kb on - strand, within HP15_1421 at 1505.026 kb on - strand, within HP15_1421 at 1505.181 kb on + strand, within HP15_1421 at 1505.203 kb on + strand, within HP15_1421 at 1505.518 kb on - strand, within HP15_1422 at 1505.549 kb on + strand, within HP15_1422 at 1505.644 kb on + strand, within HP15_1422
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 1,503,076 - -0.3 1,503,125 - -0.2 1,503,174 + HP15_1419 0.12 +0.5 1,503,294 - HP15_1419 0.26 +0.2 1,503,294 - HP15_1419 0.26 -0.1 1,503,319 - HP15_1419 0.29 -0.4 1,503,390 - HP15_1419 0.38 -0.3 1,503,392 + HP15_1419 0.38 -0.1 1,503,413 - HP15_1419 0.41 +0.2 1,503,471 - HP15_1419 0.48 +0.0 1,503,510 - HP15_1419 0.53 +0.3 1,503,536 - HP15_1419 0.56 -0.1 1,503,623 + HP15_1419 0.67 -0.5 1,503,703 - HP15_1419 0.76 -3.1 1,503,703 - HP15_1419 0.76 +0.1 1,503,778 + HP15_1419 0.85 -0.0 1,503,818 + +0.0 1,504,008 - -0.4 1,504,008 - +0.0 1,504,100 + -0.3 1,504,122 - HP15_1420 0.11 -0.2 1,504,251 - HP15_1420 0.30 -0.6 1,504,334 - HP15_1420 0.43 -0.4 1,504,417 - HP15_1420 0.55 -0.5 1,504,443 + HP15_1420 0.59 -1.2 1,504,523 - HP15_1420 0.71 +0.3 1,504,680 - -0.2 1,504,755 + -1.1 1,504,763 - -0.3 1,504,767 - +0.2 1,504,803 + HP15_1421 0.13 -0.3 1,504,916 - HP15_1421 0.31 -0.0 1,504,916 - HP15_1421 0.31 -0.4 1,505,026 - HP15_1421 0.48 -0.3 1,505,181 + HP15_1421 0.71 -0.1 1,505,203 + HP15_1421 0.75 -0.2 1,505,518 - HP15_1422 0.21 +0.2 1,505,549 + HP15_1422 0.25 -1.7 1,505,644 + HP15_1422 0.39 +0.3
Or see this region's nucleotide sequence