Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1005 and HP15_1006 are separated by 29 nucleotides HP15_1006 and HP15_1007 are separated by 104 nucleotides HP15_1007 and HP15_1008 are separated by 24 nucleotides
HP15_1005: HP15_1005 - acyl-CoA dehydrogenase domain protein, at 1,016,055 to 1,017,224
_1005
HP15_1006: HP15_1006 - transcriptional regulator, MerR family, at 1,017,254 to 1,017,697
_1006
HP15_1007: HP15_1007 - 3-hydroxyacyl-CoA dehydrogenase type II, at 1,017,802 to 1,018,563
_1007
HP15_1008: HP15_1008 - acyl-CoA dehydrogenase domain protein, at 1,018,588 to 1,019,739
_1008
Position (kb)
1017
1018 Strain fitness (log2 ratio)
-2
-1
0
1 at 1016.364 kb on - strand, within HP15_1005 at 1017.597 kb on + strand, within HP15_1006 at 1017.605 kb on - strand, within HP15_1006 at 1017.616 kb on - strand, within HP15_1006 at 1017.847 kb on + strand at 1017.856 kb on - strand at 1017.919 kb on + strand, within HP15_1007 at 1018.002 kb on + strand, within HP15_1007 at 1018.052 kb on + strand, within HP15_1007 at 1018.177 kb on + strand, within HP15_1007 at 1018.295 kb on + strand, within HP15_1007 at 1018.487 kb on + strand at 1018.679 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 1,016,364 - HP15_1005 0.26 -0.3 1,017,597 + HP15_1006 0.77 -0.3 1,017,605 - HP15_1006 0.79 -0.7 1,017,616 - HP15_1006 0.82 -2.3 1,017,847 + -0.7 1,017,856 - -0.3 1,017,919 + HP15_1007 0.15 +0.1 1,018,002 + HP15_1007 0.26 -0.2 1,018,052 + HP15_1007 0.33 +0.2 1,018,177 + HP15_1007 0.49 -0.2 1,018,295 + HP15_1007 0.65 +0.4 1,018,487 + +0.4 1,018,679 - +0.3
Or see this region's nucleotide sequence