Experiment: Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0055 and DVUA0056 overlap by 11 nucleotides DVUA0056 and atoC are separated by 154 nucleotides atoC and DVUA0058 are separated by 40 nucleotides
DVUA0055: DVUA0055 - membrane protein, putative (TIGR), at 66,969 to 67,922
DVUA0055
DVUA0056: DVUA0056 - hypothetical protein (TIGR), at 67,912 to 68,532
DVUA0056
DVUA0057: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 68,687 to 70,117
atoC
DVUA0058: DVUA0058 - BNR/Asp-box repeat protein (TIGR), at 70,158 to 72,893
DVUA0058
Position (kb) 68
69
70
71 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 67.803 kb on + strand, within DVUA0055 at 67.803 kb on + strand, within DVUA0055 at 67.874 kb on + strand at 67.892 kb on - strand at 67.911 kb on + strand at 67.966 kb on + strand at 67.974 kb on - strand, within DVUA0056 at 68.040 kb on + strand, within DVUA0056 at 68.045 kb on + strand, within DVUA0056 at 68.045 kb on + strand, within DVUA0056 at 68.053 kb on - strand, within DVUA0056 at 68.053 kb on - strand, within DVUA0056 at 68.053 kb on - strand, within DVUA0056 at 68.053 kb on - strand, within DVUA0056 at 68.143 kb on - strand, within DVUA0056 at 68.175 kb on + strand, within DVUA0056 at 68.181 kb on + strand, within DVUA0056 at 68.209 kb on - strand, within DVUA0056 at 68.212 kb on + strand, within DVUA0056 at 68.258 kb on - strand, within DVUA0056 at 68.427 kb on + strand, within DVUA0056 at 68.432 kb on + strand, within DVUA0056 at 68.450 kb on - strand, within DVUA0056 at 68.688 kb on + strand at 68.703 kb on - strand at 68.816 kb on - strand at 68.920 kb on + strand, within atoC at 69.123 kb on - strand, within atoC at 69.221 kb on + strand, within atoC at 69.231 kb on - strand, within atoC at 69.231 kb on - strand, within atoC at 69.231 kb on - strand, within atoC at 69.353 kb on + strand, within atoC at 69.368 kb on - strand, within atoC at 69.415 kb on - strand, within atoC at 69.424 kb on - strand, within atoC at 69.432 kb on - strand, within atoC at 69.443 kb on + strand, within atoC at 69.448 kb on + strand, within atoC at 69.448 kb on + strand, within atoC at 69.451 kb on - strand, within atoC at 69.489 kb on - strand, within atoC at 69.514 kb on + strand, within atoC at 69.535 kb on - strand, within atoC at 69.649 kb on + strand, within atoC at 69.662 kb on + strand, within atoC at 69.681 kb on - strand, within atoC at 69.772 kb on - strand, within atoC at 69.851 kb on + strand, within atoC at 69.941 kb on - strand, within atoC at 69.955 kb on + strand, within atoC at 69.963 kb on - strand, within atoC at 70.006 kb on + strand at 70.026 kb on - strand at 70.104 kb on + strand at 70.104 kb on + strand at 70.157 kb on + strand at 70.393 kb on + strand at 70.401 kb on - strand at 70.482 kb on + strand, within DVUA0058 at 70.505 kb on - strand, within DVUA0058 at 70.550 kb on + strand, within DVUA0058 at 70.659 kb on + strand, within DVUA0058 at 70.668 kb on - strand, within DVUA0058 at 70.705 kb on - strand, within DVUA0058 at 70.719 kb on + strand, within DVUA0058 at 70.819 kb on - strand, within DVUA0058 at 70.968 kb on + strand, within DVUA0058 at 71.024 kb on + strand, within DVUA0058 at 71.034 kb on - strand, within DVUA0058 at 71.041 kb on + strand, within DVUA0058 at 71.049 kb on - strand, within DVUA0058 at 71.049 kb on - strand, within DVUA0058 at 71.052 kb on - strand, within DVUA0058 at 71.063 kb on + strand, within DVUA0058
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM remove 67,803 + DVUA0055 0.87 -0.1 67,803 + DVUA0055 0.87 -0.8 67,874 + -0.6 67,892 - -2.0 67,911 + +0.4 67,966 + -3.3 67,974 - DVUA0056 0.10 -0.7 68,040 + DVUA0056 0.21 -0.6 68,045 + DVUA0056 0.21 -0.9 68,045 + DVUA0056 0.21 -0.4 68,053 - DVUA0056 0.23 -0.6 68,053 - DVUA0056 0.23 -0.2 68,053 - DVUA0056 0.23 +0.2 68,053 - DVUA0056 0.23 +0.4 68,143 - DVUA0056 0.37 -1.6 68,175 + DVUA0056 0.42 +0.2 68,181 + DVUA0056 0.43 +0.1 68,209 - DVUA0056 0.48 +0.6 68,212 + DVUA0056 0.48 -0.5 68,258 - DVUA0056 0.56 -1.0 68,427 + DVUA0056 0.83 -0.5 68,432 + DVUA0056 0.84 -0.1 68,450 - DVUA0056 0.87 -0.7 68,688 + -1.1 68,703 - -0.2 68,816 - +0.4 68,920 + atoC DVUA0057 0.16 +0.0 69,123 - atoC DVUA0057 0.30 +0.2 69,221 + atoC DVUA0057 0.37 +2.2 69,231 - atoC DVUA0057 0.38 +0.3 69,231 - atoC DVUA0057 0.38 -0.5 69,231 - atoC DVUA0057 0.38 -1.5 69,353 + atoC DVUA0057 0.47 -0.2 69,368 - atoC DVUA0057 0.48 +2.5 69,415 - atoC DVUA0057 0.51 +0.0 69,424 - atoC DVUA0057 0.52 +0.3 69,432 - atoC DVUA0057 0.52 -0.1 69,443 + atoC DVUA0057 0.53 +1.3 69,448 + atoC DVUA0057 0.53 +0.2 69,448 + atoC DVUA0057 0.53 +0.3 69,451 - atoC DVUA0057 0.53 -0.2 69,489 - atoC DVUA0057 0.56 +0.3 69,514 + atoC DVUA0057 0.58 +0.9 69,535 - atoC DVUA0057 0.59 +1.2 69,649 + atoC DVUA0057 0.67 +0.2 69,662 + atoC DVUA0057 0.68 +0.3 69,681 - atoC DVUA0057 0.69 +0.4 69,772 - atoC DVUA0057 0.76 -0.3 69,851 + atoC DVUA0057 0.81 -0.7 69,941 - atoC DVUA0057 0.88 -0.7 69,955 + atoC DVUA0057 0.89 -0.7 69,963 - atoC DVUA0057 0.89 -0.2 70,006 + -0.5 70,026 - +0.2 70,104 + -1.5 70,104 + +0.0 70,157 + -0.6 70,393 + -0.4 70,401 - -0.2 70,482 + DVUA0058 0.12 -2.2 70,505 - DVUA0058 0.13 -0.9 70,550 + DVUA0058 0.14 -0.1 70,659 + DVUA0058 0.18 -1.0 70,668 - DVUA0058 0.19 -4.6 70,705 - DVUA0058 0.20 -0.7 70,719 + DVUA0058 0.21 +0.3 70,819 - DVUA0058 0.24 +0.1 70,968 + DVUA0058 0.30 +0.2 71,024 + DVUA0058 0.32 -1.2 71,034 - DVUA0058 0.32 +0.9 71,041 + DVUA0058 0.32 -0.7 71,049 - DVUA0058 0.33 -0.6 71,049 - DVUA0058 0.33 -0.4 71,052 - DVUA0058 0.33 +0.4 71,063 + DVUA0058 0.33 -0.7
Or see this region's nucleotide sequence