Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0255

Experiment: Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0253 and DVU0255 are separated by 509 nucleotidesDVU0255 and DVU0256 are separated by 109 nucleotides DVU0253: DVU0253 - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein (TIGR), at 287,022 to 289,847 DVU0253 DVU0255: DVU0255 - hypothetical protein (TIGR), at 290,357 to 290,911 DVU0255 DVU0256: DVU0256 - ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR), at 291,021 to 294,386 DVU0256 Position (kb) 290 291Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 289.368 kb on - strand, within DVU0253at 289.397 kb on - strand, within DVU0253at 289.530 kb on - strand, within DVU0253at 289.573 kb on - strandat 289.638 kb on + strandat 289.659 kb on - strandat 289.684 kb on + strandat 289.723 kb on - strandat 289.793 kb on - strandat 289.842 kb on - strandat 289.852 kb on - strandat 289.948 kb on + strandat 289.948 kb on + strandat 289.967 kb on - strandat 289.992 kb on + strandat 290.000 kb on - strandat 290.082 kb on + strandat 290.082 kb on + strandat 290.090 kb on - strandat 290.090 kb on - strandat 290.261 kb on + strandat 290.365 kb on - strandat 290.406 kb on + strandat 290.414 kb on - strand, within DVU0255at 290.493 kb on - strand, within DVU0255at 290.564 kb on - strand, within DVU0255at 290.599 kb on - strand, within DVU0255at 290.601 kb on - strand, within DVU0255at 290.623 kb on - strand, within DVU0255at 290.650 kb on - strand, within DVU0255at 290.669 kb on + strand, within DVU0255at 290.677 kb on - strand, within DVU0255at 290.677 kb on - strand, within DVU0255at 290.689 kb on + strand, within DVU0255at 290.693 kb on - strand, within DVU0255at 290.697 kb on - strand, within DVU0255at 290.701 kb on + strand, within DVU0255at 290.701 kb on + strand, within DVU0255at 290.709 kb on - strand, within DVU0255at 290.709 kb on - strand, within DVU0255at 290.713 kb on + strand, within DVU0255at 290.731 kb on + strand, within DVU0255at 290.769 kb on + strand, within DVU0255at 290.777 kb on + strand, within DVU0255at 290.777 kb on - strand, within DVU0255at 290.808 kb on + strand, within DVU0255at 290.808 kb on + strand, within DVU0255at 290.808 kb on - strand, within DVU0255at 290.840 kb on - strand, within DVU0255at 290.871 kb on + strandat 290.905 kb on + strandat 291.069 kb on + strandat 291.079 kb on + strandat 291.104 kb on + strandat 291.116 kb on + strandat 291.149 kb on + strandat 291.174 kb on + strandat 291.182 kb on - strandat 291.224 kb on + strandat 291.242 kb on + strandat 291.255 kb on - strandat 291.304 kb on - strandat 291.305 kb on + strandat 291.314 kb on + strandat 291.337 kb on - strandat 291.354 kb on + strandat 291.362 kb on - strand, within DVU0256at 291.365 kb on + strand, within DVU0256at 291.365 kb on + strand, within DVU0256at 291.395 kb on - strand, within DVU0256at 291.465 kb on + strand, within DVU0256at 291.473 kb on - strand, within DVU0256at 291.492 kb on - strand, within DVU0256at 291.523 kb on + strand, within DVU0256at 291.558 kb on + strand, within DVU0256at 291.558 kb on + strand, within DVU0256at 291.561 kb on - strand, within DVU0256at 291.574 kb on + strand, within DVU0256at 291.577 kb on + strand, within DVU0256at 291.590 kb on - strand, within DVU0256at 291.639 kb on - strand, within DVU0256at 291.676 kb on + strand, within DVU0256at 291.681 kb on + strand, within DVU0256at 291.713 kb on + strand, within DVU0256at 291.731 kb on - strand, within DVU0256at 291.839 kb on - strand, within DVU0256at 291.854 kb on + strand, within DVU0256at 291.886 kb on - strand, within DVU0256at 291.892 kb on - strand, within DVU0256

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM
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289,368 - DVU0253 0.83 +0.4
289,397 - DVU0253 0.84 +0.7
289,530 - DVU0253 0.89 -0.5
289,573 - +0.2
289,638 + +0.5
289,659 - -0.1
289,684 + -0.1
289,723 - +1.3
289,793 - -0.5
289,842 - +0.1
289,852 - -0.3
289,948 + -0.1
289,948 + +0.4
289,967 - +0.3
289,992 + +0.9
290,000 - +0.3
290,082 + -0.1
290,082 + -0.7
290,090 - -0.7
290,090 - +0.8
290,261 + -0.7
290,365 - -0.9
290,406 + +0.7
290,414 - DVU0255 0.10 -0.9
290,493 - DVU0255 0.25 -0.3
290,564 - DVU0255 0.37 -0.4
290,599 - DVU0255 0.44 -0.7
290,601 - DVU0255 0.44 -2.3
290,623 - DVU0255 0.48 +0.2
290,650 - DVU0255 0.53 -0.4
290,669 + DVU0255 0.56 +0.1
290,677 - DVU0255 0.58 +1.1
290,677 - DVU0255 0.58 -0.1
290,689 + DVU0255 0.60 -0.9
290,693 - DVU0255 0.61 -0.2
290,697 - DVU0255 0.61 -1.6
290,701 + DVU0255 0.62 -1.8
290,701 + DVU0255 0.62 -2.0
290,709 - DVU0255 0.63 -1.2
290,709 - DVU0255 0.63 +0.1
290,713 + DVU0255 0.64 -0.2
290,731 + DVU0255 0.67 -0.2
290,769 + DVU0255 0.74 +0.1
290,777 + DVU0255 0.76 -0.5
290,777 - DVU0255 0.76 +0.3
290,808 + DVU0255 0.81 -1.0
290,808 + DVU0255 0.81 -1.3
290,808 - DVU0255 0.81 -4.1
290,840 - DVU0255 0.87 +0.2
290,871 + -0.1
290,905 + +0.3
291,069 + +0.0
291,079 + -1.3
291,104 + +0.3
291,116 + -0.3
291,149 + +0.3
291,174 + -2.4
291,182 - -3.9
291,224 + -0.3
291,242 + -0.3
291,255 - +0.7
291,304 - +0.6
291,305 + +1.0
291,314 + +2.3
291,337 - -1.7
291,354 + -0.1
291,362 - DVU0256 0.10 -0.1
291,365 + DVU0256 0.10 -0.1
291,365 + DVU0256 0.10 -2.2
291,395 - DVU0256 0.11 -0.2
291,465 + DVU0256 0.13 +1.5
291,473 - DVU0256 0.13 +0.2
291,492 - DVU0256 0.14 +0.0
291,523 + DVU0256 0.15 +0.3
291,558 + DVU0256 0.16 -0.6
291,558 + DVU0256 0.16 +0.6
291,561 - DVU0256 0.16 -1.1
291,574 + DVU0256 0.16 -0.1
291,577 + DVU0256 0.17 -0.1
291,590 - DVU0256 0.17 -0.4
291,639 - DVU0256 0.18 -0.3
291,676 + DVU0256 0.19 -0.1
291,681 + DVU0256 0.20 +0.7
291,713 + DVU0256 0.21 +0.6
291,731 - DVU0256 0.21 -1.2
291,839 - DVU0256 0.24 -0.3
291,854 + DVU0256 0.25 +2.1
291,886 - DVU0256 0.26 -0.4
291,892 - DVU0256 0.26 -0.3

Or see this region's nucleotide sequence