Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2364

Experiment: Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthiM and DVU2364 are separated by 329 nucleotidesDVU2364 and DVU2365 are separated by 34 nucleotides DVU2363: thiM - hydroxyethylthiazole kinase (TIGR), at 2,460,101 to 2,460,904 thiM DVU2364: DVU2364 - aminotransferase, classes I and II (TIGR), at 2,461,234 to 2,462,400 DVU2364 DVU2365: DVU2365 - conserved hypothetical protein (TIGR), at 2,462,435 to 2,463,259 DVU2365 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2460.314 kb on + strand, within thiMat 2460.322 kb on - strand, within thiMat 2460.322 kb on - strand, within thiMat 2460.412 kb on - strand, within thiMat 2460.468 kb on + strand, within thiMat 2460.477 kb on - strand, within thiMat 2460.487 kb on - strand, within thiMat 2460.494 kb on - strand, within thiMat 2460.494 kb on - strand, within thiMat 2460.504 kb on + strand, within thiMat 2460.571 kb on - strand, within thiMat 2460.597 kb on + strand, within thiMat 2460.597 kb on + strand, within thiMat 2460.605 kb on - strand, within thiMat 2460.637 kb on + strand, within thiMat 2460.675 kb on - strand, within thiMat 2460.791 kb on - strand, within thiMat 2460.827 kb on - strandat 2460.892 kb on - strandat 2460.902 kb on + strandat 2460.902 kb on - strandat 2460.914 kb on + strandat 2460.947 kb on - strandat 2460.947 kb on - strandat 2461.065 kb on + strandat 2461.149 kb on - strandat 2461.167 kb on - strandat 2461.421 kb on + strand, within DVU2364at 2461.429 kb on - strand, within DVU2364at 2461.555 kb on + strand, within DVU2364at 2461.823 kb on + strand, within DVU2364at 2461.910 kb on + strand, within DVU2364at 2461.928 kb on + strand, within DVU2364at 2461.928 kb on + strand, within DVU2364at 2461.977 kb on + strand, within DVU2364at 2461.993 kb on - strand, within DVU2364at 2462.058 kb on - strand, within DVU2364at 2462.207 kb on + strand, within DVU2364at 2462.212 kb on + strand, within DVU2364at 2462.277 kb on - strand, within DVU2364at 2462.385 kb on - strandat 2462.385 kb on - strandat 2462.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Fluorophosphate 1mM
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2,460,314 + thiM DVU2363 0.26 -0.7
2,460,322 - thiM DVU2363 0.27 -0.1
2,460,322 - thiM DVU2363 0.27 +1.3
2,460,412 - thiM DVU2363 0.39 -0.9
2,460,468 + thiM DVU2363 0.46 -0.0
2,460,477 - thiM DVU2363 0.47 -0.2
2,460,487 - thiM DVU2363 0.48 -0.8
2,460,494 - thiM DVU2363 0.49 -0.1
2,460,494 - thiM DVU2363 0.49 +1.3
2,460,504 + thiM DVU2363 0.50 +0.8
2,460,571 - thiM DVU2363 0.58 -0.4
2,460,597 + thiM DVU2363 0.62 -1.7
2,460,597 + thiM DVU2363 0.62 -1.4
2,460,605 - thiM DVU2363 0.63 -0.0
2,460,637 + thiM DVU2363 0.67 -0.3
2,460,675 - thiM DVU2363 0.71 +0.1
2,460,791 - thiM DVU2363 0.86 -0.9
2,460,827 - +0.6
2,460,892 - -0.7
2,460,902 + -0.3
2,460,902 - -0.0
2,460,914 + -0.1
2,460,947 - -0.6
2,460,947 - -0.1
2,461,065 + -0.1
2,461,149 - -0.9
2,461,167 - -0.7
2,461,421 + DVU2364 0.16 -1.1
2,461,429 - DVU2364 0.17 -0.1
2,461,555 + DVU2364 0.28 -1.1
2,461,823 + DVU2364 0.50 -1.3
2,461,910 + DVU2364 0.58 -4.4
2,461,928 + DVU2364 0.59 -0.9
2,461,928 + DVU2364 0.59 +0.8
2,461,977 + DVU2364 0.64 -0.2
2,461,993 - DVU2364 0.65 -2.1
2,462,058 - DVU2364 0.71 -2.1
2,462,207 + DVU2364 0.83 +0.0
2,462,212 + DVU2364 0.84 -0.4
2,462,277 - DVU2364 0.89 +0.6
2,462,385 - -0.3
2,462,385 - +0.2
2,462,423 + +0.1

Or see this region's nucleotide sequence