Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1110

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1109 and Rru_A1110 are separated by 367 nucleotidesRru_A1110 and Rru_A1111 are separated by 219 nucleotides Rru_A1109: Rru_A1109 - chemotaxis sensory transducer (NCBI), at 1,303,469 to 1,305,169 _A1109 Rru_A1110: Rru_A1110 - Sigma 32 (RpoH) (NCBI), at 1,305,537 to 1,306,436 _A1110 Rru_A1111: Rru_A1111 - Pseudouridine synthase, RluD (NCBI), at 1,306,656 to 1,307,687 _A1111 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -2 -1 0 1 2at 1304.779 kb on + strand, within Rru_A1109at 1304.779 kb on + strand, within Rru_A1109at 1304.779 kb on + strand, within Rru_A1109at 1304.779 kb on + strand, within Rru_A1109at 1304.780 kb on - strand, within Rru_A1109at 1304.780 kb on - strand, within Rru_A1109at 1304.790 kb on + strand, within Rru_A1109at 1304.790 kb on + strand, within Rru_A1109at 1304.791 kb on - strand, within Rru_A1109at 1304.791 kb on - strand, within Rru_A1109at 1304.898 kb on + strand, within Rru_A1109at 1304.914 kb on - strand, within Rru_A1109at 1304.914 kb on - strand, within Rru_A1109at 1304.914 kb on - strand, within Rru_A1109at 1304.966 kb on + strand, within Rru_A1109at 1304.994 kb on + strand, within Rru_A1109at 1304.994 kb on + strand, within Rru_A1109at 1304.995 kb on - strand, within Rru_A1109at 1304.995 kb on - strand, within Rru_A1109at 1304.995 kb on - strand, within Rru_A1109at 1305.109 kb on + strandat 1305.109 kb on + strandat 1305.110 kb on - strandat 1305.146 kb on - strandat 1305.211 kb on + strandat 1305.211 kb on + strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.252 kb on + strandat 1305.306 kb on - strandat 1305.306 kb on - strandat 1305.332 kb on + strandat 1305.475 kb on - strandat 1305.486 kb on - strandat 1305.539 kb on - strandat 1305.655 kb on + strand, within Rru_A1110at 1305.656 kb on - strand, within Rru_A1110at 1305.865 kb on - strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.334 kb on - strand, within Rru_A1110at 1306.334 kb on - strand, within Rru_A1110at 1306.334 kb on - strand, within Rru_A1110at 1306.381 kb on + strandat 1306.381 kb on + strandat 1306.381 kb on + strandat 1306.382 kb on - strandat 1306.382 kb on - strandat 1306.382 kb on - strandat 1306.451 kb on + strandat 1306.451 kb on + strandat 1306.451 kb on + strandat 1306.451 kb on + strandat 1306.451 kb on + strandat 1306.452 kb on - strandat 1306.488 kb on + strandat 1306.534 kb on + strandat 1306.534 kb on + strandat 1306.534 kb on + strandat 1306.534 kb on + strandat 1306.534 kb on + strandat 1306.535 kb on - strandat 1306.630 kb on - strandat 1306.630 kb on - strandat 1306.630 kb on - strandat 1306.634 kb on + strandat 1306.634 kb on + strandat 1306.634 kb on + strandat 1306.657 kb on + strandat 1306.764 kb on + strand, within Rru_A1111at 1306.764 kb on + strand, within Rru_A1111at 1306.779 kb on + strand, within Rru_A1111at 1306.779 kb on + strand, within Rru_A1111at 1306.780 kb on - strand, within Rru_A1111at 1306.780 kb on - strand, within Rru_A1111at 1306.780 kb on - strand, within Rru_A1111at 1306.780 kb on - strand, within Rru_A1111at 1306.847 kb on + strand, within Rru_A1111at 1306.848 kb on - strand, within Rru_A1111at 1306.848 kb on - strand, within Rru_A1111at 1306.848 kb on - strand, within Rru_A1111at 1306.895 kb on + strand, within Rru_A1111at 1306.895 kb on + strand, within Rru_A1111at 1306.895 kb on + strand, within Rru_A1111at 1306.896 kb on - strand, within Rru_A1111at 1306.896 kb on - strand, within Rru_A1111at 1307.111 kb on - strand, within Rru_A1111at 1307.111 kb on - strand, within Rru_A1111at 1307.111 kb on - strand, within Rru_A1111at 1307.198 kb on + strand, within Rru_A1111at 1307.199 kb on - strand, within Rru_A1111at 1307.199 kb on - strand, within Rru_A1111at 1307.348 kb on + strand, within Rru_A1111at 1307.371 kb on + strand, within Rru_A1111at 1307.371 kb on + strand, within Rru_A1111at 1307.371 kb on + strand, within Rru_A1111at 1307.371 kb on + strand, within Rru_A1111at 1307.372 kb on - strand, within Rru_A1111at 1307.372 kb on - strand, within Rru_A1111at 1307.372 kb on - strand, within Rru_A1111

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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1,304,779 + Rru_A1109 0.77 -0.2
1,304,779 + Rru_A1109 0.77 -0.4
1,304,779 + Rru_A1109 0.77 -0.5
1,304,779 + Rru_A1109 0.77 +0.3
1,304,780 - Rru_A1109 0.77 +0.8
1,304,780 - Rru_A1109 0.77 -0.2
1,304,790 + Rru_A1109 0.78 +0.7
1,304,790 + Rru_A1109 0.78 -0.2
1,304,791 - Rru_A1109 0.78 -0.0
1,304,791 - Rru_A1109 0.78 -0.1
1,304,898 + Rru_A1109 0.84 -0.1
1,304,914 - Rru_A1109 0.85 -0.1
1,304,914 - Rru_A1109 0.85 -1.4
1,304,914 - Rru_A1109 0.85 -0.5
1,304,966 + Rru_A1109 0.88 +1.1
1,304,994 + Rru_A1109 0.90 -0.1
1,304,994 + Rru_A1109 0.90 +0.1
1,304,995 - Rru_A1109 0.90 +0.4
1,304,995 - Rru_A1109 0.90 -0.9
1,304,995 - Rru_A1109 0.90 -0.1
1,305,109 + -1.7
1,305,109 + -0.1
1,305,110 - +0.5
1,305,146 - +0.6
1,305,211 + +1.3
1,305,211 + -0.7
1,305,212 - -0.8
1,305,212 - +0.3
1,305,212 - -0.6
1,305,212 - +0.4
1,305,212 - +0.7
1,305,212 - -0.1
1,305,252 + +1.3
1,305,306 - +0.8
1,305,306 - -0.3
1,305,332 + -0.3
1,305,475 - -1.0
1,305,486 - -0.3
1,305,539 - -0.2
1,305,655 + Rru_A1110 0.13 +0.6
1,305,656 - Rru_A1110 0.13 +0.2
1,305,865 - Rru_A1110 0.36 -0.1
1,306,090 + Rru_A1110 0.61 +0.1
1,306,090 + Rru_A1110 0.61 +0.3
1,306,090 + Rru_A1110 0.61 +1.0
1,306,090 + Rru_A1110 0.61 +0.6
1,306,091 - Rru_A1110 0.62 +0.7
1,306,091 - Rru_A1110 0.62 +0.4
1,306,091 - Rru_A1110 0.62 +0.5
1,306,091 - Rru_A1110 0.62 +0.5
1,306,121 + Rru_A1110 0.65 +1.0
1,306,121 + Rru_A1110 0.65 +0.6
1,306,121 + Rru_A1110 0.65 +0.2
1,306,121 + Rru_A1110 0.65 +0.3
1,306,121 + Rru_A1110 0.65 +0.6
1,306,121 + Rru_A1110 0.65 -0.3
1,306,121 + Rru_A1110 0.65 +0.5
1,306,122 - Rru_A1110 0.65 +0.4
1,306,122 - Rru_A1110 0.65 +0.1
1,306,122 - Rru_A1110 0.65 +0.2
1,306,122 - Rru_A1110 0.65 +0.6
1,306,122 - Rru_A1110 0.65 +0.0
1,306,122 - Rru_A1110 0.65 +0.2
1,306,122 - Rru_A1110 0.65 -0.1
1,306,126 + Rru_A1110 0.65 +0.2
1,306,126 + Rru_A1110 0.65 -0.2
1,306,126 + Rru_A1110 0.65 +0.2
1,306,126 + Rru_A1110 0.65 +0.3
1,306,126 + Rru_A1110 0.65 +0.9
1,306,126 + Rru_A1110 0.65 +0.5
1,306,126 + Rru_A1110 0.65 +1.0
1,306,126 + Rru_A1110 0.65 -0.2
1,306,126 + Rru_A1110 0.65 +0.1
1,306,126 + Rru_A1110 0.65 +0.4
1,306,126 + Rru_A1110 0.65 +0.4
1,306,126 + Rru_A1110 0.65 +1.0
1,306,126 + Rru_A1110 0.65 +1.3
1,306,126 + Rru_A1110 0.65 +0.1
1,306,126 + Rru_A1110 0.65 +1.3
1,306,126 + Rru_A1110 0.65 -1.4
1,306,126 + Rru_A1110 0.65 -1.7
1,306,127 - Rru_A1110 0.66 +0.3
1,306,127 - Rru_A1110 0.66 +0.6
1,306,127 - Rru_A1110 0.66 +0.4
1,306,127 - Rru_A1110 0.66 +0.1
1,306,127 - Rru_A1110 0.66 +0.4
1,306,127 - Rru_A1110 0.66 +0.2
1,306,127 - Rru_A1110 0.66 +0.4
1,306,127 - Rru_A1110 0.66 +0.2
1,306,127 - Rru_A1110 0.66 -0.0
1,306,127 - Rru_A1110 0.66 +1.1
1,306,127 - Rru_A1110 0.66 +1.1
1,306,334 - Rru_A1110 0.89 +0.7
1,306,334 - Rru_A1110 0.89 +0.7
1,306,334 - Rru_A1110 0.89 +0.2
1,306,381 + +0.2
1,306,381 + +0.2
1,306,381 + +0.2
1,306,382 - +0.5
1,306,382 - +0.0
1,306,382 - +1.1
1,306,451 + +0.2
1,306,451 + +0.8
1,306,451 + +0.2
1,306,451 + -0.7
1,306,451 + -1.1
1,306,452 - +0.4
1,306,488 + +0.2
1,306,534 + +0.0
1,306,534 + +1.5
1,306,534 + +0.7
1,306,534 + -0.3
1,306,534 + +0.0
1,306,535 - -0.2
1,306,630 - +0.1
1,306,630 - +0.7
1,306,630 - -0.0
1,306,634 + +0.4
1,306,634 + +0.7
1,306,634 + +0.6
1,306,657 + +0.3
1,306,764 + Rru_A1111 0.10 -0.8
1,306,764 + Rru_A1111 0.10 +1.9
1,306,779 + Rru_A1111 0.12 +0.4
1,306,779 + Rru_A1111 0.12 -0.6
1,306,780 - Rru_A1111 0.12 -1.3
1,306,780 - Rru_A1111 0.12 -0.3
1,306,780 - Rru_A1111 0.12 -0.3
1,306,780 - Rru_A1111 0.12 +0.0
1,306,847 + Rru_A1111 0.19 -0.7
1,306,848 - Rru_A1111 0.19 -0.1
1,306,848 - Rru_A1111 0.19 -0.5
1,306,848 - Rru_A1111 0.19 -0.8
1,306,895 + Rru_A1111 0.23 +0.2
1,306,895 + Rru_A1111 0.23 -0.4
1,306,895 + Rru_A1111 0.23 -0.3
1,306,896 - Rru_A1111 0.23 -1.2
1,306,896 - Rru_A1111 0.23 -1.1
1,307,111 - Rru_A1111 0.44 -0.4
1,307,111 - Rru_A1111 0.44 -0.6
1,307,111 - Rru_A1111 0.44 -0.5
1,307,198 + Rru_A1111 0.53 -1.8
1,307,199 - Rru_A1111 0.53 +0.0
1,307,199 - Rru_A1111 0.53 -2.0
1,307,348 + Rru_A1111 0.67 -0.7
1,307,371 + Rru_A1111 0.69 +1.3
1,307,371 + Rru_A1111 0.69 -0.8
1,307,371 + Rru_A1111 0.69 +1.1
1,307,371 + Rru_A1111 0.69 -0.1
1,307,372 - Rru_A1111 0.69 -0.3
1,307,372 - Rru_A1111 0.69 +1.1
1,307,372 - Rru_A1111 0.69 -0.7

Or see this region's nucleotide sequence