Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0925

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0924 and Rru_A0925 overlap by 4 nucleotidesRru_A0925 and Rru_A0926 are separated by 124 nucleotides Rru_A0924: Rru_A0924 - mannose-6-phosphate isomerase (NCBI), at 1,098,816 to 1,099,739 _A0924 Rru_A0925: Rru_A0925 - Glycosyl transferase, group 1 (NCBI), at 1,099,736 to 1,102,021 _A0925 Rru_A0926: Rru_A0926 - Glycosidase, PH1107-related (NCBI), at 1,102,146 to 1,103,447 _A0926 Position (kb) 1099 1100 1101 1102 1103Strain fitness (log2 ratio) -2 -1 0 1at 1099.089 kb on + strand, within Rru_A0924at 1099.089 kb on + strand, within Rru_A0924at 1099.089 kb on + strand, within Rru_A0924at 1099.090 kb on - strand, within Rru_A0924at 1099.327 kb on - strand, within Rru_A0924at 1099.648 kb on - strandat 1099.889 kb on + strandat 1099.890 kb on - strandat 1099.895 kb on + strandat 1099.896 kb on - strandat 1099.943 kb on + strandat 1099.944 kb on - strandat 1099.944 kb on - strandat 1099.944 kb on - strandat 1100.090 kb on - strand, within Rru_A0925at 1100.408 kb on + strand, within Rru_A0925at 1100.409 kb on - strand, within Rru_A0925at 1100.579 kb on + strand, within Rru_A0925at 1100.579 kb on + strand, within Rru_A0925at 1100.579 kb on + strand, within Rru_A0925at 1100.579 kb on + strand, within Rru_A0925at 1100.579 kb on + strand, within Rru_A0925at 1100.579 kb on + strand, within Rru_A0925at 1100.580 kb on - strand, within Rru_A0925at 1100.580 kb on - strand, within Rru_A0925at 1100.580 kb on - strand, within Rru_A0925at 1100.580 kb on - strand, within Rru_A0925at 1100.580 kb on - strand, within Rru_A0925at 1100.580 kb on - strand, within Rru_A0925at 1100.580 kb on - strand, within Rru_A0925at 1100.591 kb on + strand, within Rru_A0925at 1100.592 kb on - strand, within Rru_A0925at 1100.630 kb on + strand, within Rru_A0925at 1100.630 kb on + strand, within Rru_A0925at 1100.630 kb on + strand, within Rru_A0925at 1100.631 kb on - strand, within Rru_A0925at 1100.631 kb on - strand, within Rru_A0925at 1100.631 kb on - strand, within Rru_A0925at 1100.633 kb on - strand, within Rru_A0925at 1100.633 kb on - strand, within Rru_A0925at 1100.804 kb on + strand, within Rru_A0925at 1100.804 kb on + strand, within Rru_A0925at 1100.804 kb on + strand, within Rru_A0925at 1100.804 kb on + strand, within Rru_A0925at 1100.804 kb on + strand, within Rru_A0925at 1100.805 kb on - strand, within Rru_A0925at 1100.805 kb on - strand, within Rru_A0925at 1100.805 kb on - strand, within Rru_A0925at 1100.805 kb on - strand, within Rru_A0925at 1100.805 kb on - strand, within Rru_A0925at 1101.039 kb on - strand, within Rru_A0925at 1101.039 kb on - strand, within Rru_A0925at 1101.319 kb on + strand, within Rru_A0925at 1101.521 kb on + strand, within Rru_A0925at 1101.521 kb on + strand, within Rru_A0925at 1101.522 kb on - strand, within Rru_A0925at 1101.584 kb on + strand, within Rru_A0925at 1101.584 kb on + strand, within Rru_A0925at 1101.584 kb on + strand, within Rru_A0925at 1101.584 kb on + strand, within Rru_A0925at 1101.585 kb on - strand, within Rru_A0925at 1101.585 kb on - strand, within Rru_A0925at 1101.932 kb on + strandat 1101.932 kb on + strandat 1101.933 kb on - strandat 1101.933 kb on - strandat 1101.933 kb on - strandat 1102.154 kb on + strandat 1102.155 kb on - strandat 1102.163 kb on + strandat 1102.163 kb on + strandat 1102.164 kb on - strandat 1102.165 kb on + strandat 1102.165 kb on + strandat 1102.182 kb on + strandat 1102.182 kb on + strandat 1102.183 kb on - strandat 1102.280 kb on + strand, within Rru_A0926at 1102.281 kb on - strand, within Rru_A0926at 1102.467 kb on + strand, within Rru_A0926at 1102.467 kb on + strand, within Rru_A0926at 1102.467 kb on + strand, within Rru_A0926at 1102.468 kb on - strand, within Rru_A0926at 1102.468 kb on - strand, within Rru_A0926at 1102.468 kb on - strand, within Rru_A0926at 1102.468 kb on - strand, within Rru_A0926at 1102.483 kb on - strand, within Rru_A0926at 1102.854 kb on + strand, within Rru_A0926at 1102.854 kb on + strand, within Rru_A0926at 1102.854 kb on + strand, within Rru_A0926at 1102.854 kb on + strand, within Rru_A0926at 1102.854 kb on + strand, within Rru_A0926at 1102.857 kb on + strand, within Rru_A0926at 1102.857 kb on + strand, within Rru_A0926at 1102.857 kb on + strand, within Rru_A0926at 1102.858 kb on - strand, within Rru_A0926at 1102.858 kb on - strand, within Rru_A0926at 1102.858 kb on - strand, within Rru_A0926at 1102.858 kb on - strand, within Rru_A0926at 1102.858 kb on - strand, within Rru_A0926at 1102.866 kb on + strand, within Rru_A0926at 1102.866 kb on + strand, within Rru_A0926at 1102.866 kb on + strand, within Rru_A0926at 1102.866 kb on + strand, within Rru_A0926at 1102.867 kb on - strand, within Rru_A0926at 1102.867 kb on - strand, within Rru_A0926at 1102.867 kb on - strand, within Rru_A0926at 1102.867 kb on - strand, within Rru_A0926at 1102.867 kb on - strand, within Rru_A0926at 1102.869 kb on - strand, within Rru_A0926at 1102.962 kb on + strand, within Rru_A0926at 1102.962 kb on + strand, within Rru_A0926at 1102.962 kb on + strand, within Rru_A0926at 1102.962 kb on + strand, within Rru_A0926at 1102.963 kb on - strand, within Rru_A0926at 1102.963 kb on - strand, within Rru_A0926

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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1,099,089 + Rru_A0924 0.30 +0.7
1,099,089 + Rru_A0924 0.30 -1.0
1,099,089 + Rru_A0924 0.30 +1.1
1,099,090 - Rru_A0924 0.30 +1.0
1,099,327 - Rru_A0924 0.55 +0.2
1,099,648 - -0.0
1,099,889 + -1.4
1,099,890 - -1.3
1,099,895 + -0.2
1,099,896 - +0.5
1,099,943 + +0.6
1,099,944 - -0.2
1,099,944 - +1.3
1,099,944 - +0.1
1,100,090 - Rru_A0925 0.15 -0.2
1,100,408 + Rru_A0925 0.29 -0.9
1,100,409 - Rru_A0925 0.29 -0.0
1,100,579 + Rru_A0925 0.37 -0.9
1,100,579 + Rru_A0925 0.37 -0.1
1,100,579 + Rru_A0925 0.37 +0.4
1,100,579 + Rru_A0925 0.37 -0.1
1,100,579 + Rru_A0925 0.37 +0.4
1,100,579 + Rru_A0925 0.37 -0.1
1,100,580 - Rru_A0925 0.37 +0.1
1,100,580 - Rru_A0925 0.37 -0.1
1,100,580 - Rru_A0925 0.37 -0.0
1,100,580 - Rru_A0925 0.37 -0.3
1,100,580 - Rru_A0925 0.37 +0.0
1,100,580 - Rru_A0925 0.37 +0.0
1,100,580 - Rru_A0925 0.37 +1.3
1,100,591 + Rru_A0925 0.37 -2.3
1,100,592 - Rru_A0925 0.37 +0.2
1,100,630 + Rru_A0925 0.39 +1.3
1,100,630 + Rru_A0925 0.39 +0.4
1,100,630 + Rru_A0925 0.39 +0.6
1,100,631 - Rru_A0925 0.39 -0.2
1,100,631 - Rru_A0925 0.39 +0.1
1,100,631 - Rru_A0925 0.39 +1.3
1,100,633 - Rru_A0925 0.39 -0.0
1,100,633 - Rru_A0925 0.39 +0.3
1,100,804 + Rru_A0925 0.47 -0.1
1,100,804 + Rru_A0925 0.47 +0.2
1,100,804 + Rru_A0925 0.47 +0.4
1,100,804 + Rru_A0925 0.47 +1.3
1,100,804 + Rru_A0925 0.47 -1.1
1,100,805 - Rru_A0925 0.47 -0.0
1,100,805 - Rru_A0925 0.47 -0.2
1,100,805 - Rru_A0925 0.47 -1.0
1,100,805 - Rru_A0925 0.47 -0.2
1,100,805 - Rru_A0925 0.47 +1.3
1,101,039 - Rru_A0925 0.57 -0.7
1,101,039 - Rru_A0925 0.57 +0.2
1,101,319 + Rru_A0925 0.69 +0.1
1,101,521 + Rru_A0925 0.78 -0.3
1,101,521 + Rru_A0925 0.78 -0.5
1,101,522 - Rru_A0925 0.78 -1.0
1,101,584 + Rru_A0925 0.81 -0.5
1,101,584 + Rru_A0925 0.81 +1.3
1,101,584 + Rru_A0925 0.81 -0.0
1,101,584 + Rru_A0925 0.81 +0.0
1,101,585 - Rru_A0925 0.81 +0.3
1,101,585 - Rru_A0925 0.81 -0.7
1,101,932 + -0.9
1,101,932 + +0.5
1,101,933 - +0.3
1,101,933 - -0.0
1,101,933 - +0.5
1,102,154 + +0.1
1,102,155 - -0.0
1,102,163 + +0.6
1,102,163 + -0.7
1,102,164 - -0.4
1,102,165 + -0.4
1,102,165 + -0.4
1,102,182 + -0.1
1,102,182 + -1.5
1,102,183 - -0.2
1,102,280 + Rru_A0926 0.10 -0.1
1,102,281 - Rru_A0926 0.10 -1.8
1,102,467 + Rru_A0926 0.25 +0.7
1,102,467 + Rru_A0926 0.25 +0.1
1,102,467 + Rru_A0926 0.25 +0.4
1,102,468 - Rru_A0926 0.25 -0.0
1,102,468 - Rru_A0926 0.25 -0.5
1,102,468 - Rru_A0926 0.25 +0.0
1,102,468 - Rru_A0926 0.25 +1.0
1,102,483 - Rru_A0926 0.26 -0.0
1,102,854 + Rru_A0926 0.54 +0.0
1,102,854 + Rru_A0926 0.54 +0.6
1,102,854 + Rru_A0926 0.54 +0.2
1,102,854 + Rru_A0926 0.54 +0.1
1,102,854 + Rru_A0926 0.54 +1.3
1,102,857 + Rru_A0926 0.55 -0.0
1,102,857 + Rru_A0926 0.55 -0.4
1,102,857 + Rru_A0926 0.55 -0.6
1,102,858 - Rru_A0926 0.55 +0.3
1,102,858 - Rru_A0926 0.55 +0.7
1,102,858 - Rru_A0926 0.55 +0.6
1,102,858 - Rru_A0926 0.55 +0.1
1,102,858 - Rru_A0926 0.55 +0.4
1,102,866 + Rru_A0926 0.55 +0.0
1,102,866 + Rru_A0926 0.55 -0.3
1,102,866 + Rru_A0926 0.55 +0.1
1,102,866 + Rru_A0926 0.55 -0.1
1,102,867 - Rru_A0926 0.55 -0.1
1,102,867 - Rru_A0926 0.55 +0.5
1,102,867 - Rru_A0926 0.55 -0.5
1,102,867 - Rru_A0926 0.55 +0.9
1,102,867 - Rru_A0926 0.55 -0.3
1,102,869 - Rru_A0926 0.56 -0.1
1,102,962 + Rru_A0926 0.63 -0.9
1,102,962 + Rru_A0926 0.63 -0.1
1,102,962 + Rru_A0926 0.63 -0.4
1,102,962 + Rru_A0926 0.63 -0.8
1,102,963 - Rru_A0926 0.63 -0.9
1,102,963 - Rru_A0926 0.63 -1.2

Or see this region's nucleotide sequence