Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0753

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0752 and Rru_A0753 are separated by 226 nucleotidesRru_A0753 and Rru_A0754 overlap by 4 nucleotides Rru_A0752: Rru_A0752 - hypothetical protein (NCBI), at 881,635 to 882,582 _A0752 Rru_A0753: Rru_A0753 - Chaperone clpB (NCBI), at 882,809 to 885,421 _A0753 Rru_A0754: Rru_A0754 - hypothetical protein (NCBI), at 885,418 to 886,488 _A0754 Position (kb) 882 883 884 885 886Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 882.022 kb on + strand, within Rru_A0752at 882.023 kb on - strand, within Rru_A0752at 882.049 kb on + strand, within Rru_A0752at 882.651 kb on - strandat 882.651 kb on - strandat 882.651 kb on - strandat 882.714 kb on + strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.718 kb on + strandat 882.719 kb on - strandat 882.729 kb on + strandat 882.729 kb on + strandat 882.729 kb on + strandat 882.729 kb on + strandat 882.730 kb on - strandat 882.757 kb on + strandat 882.758 kb on - strandat 882.758 kb on - strandat 882.785 kb on - strandat 882.803 kb on + strandat 882.803 kb on + strandat 882.804 kb on - strandat 882.804 kb on - strandat 882.809 kb on - strandat 882.931 kb on + strandat 882.931 kb on + strandat 882.931 kb on + strandat 882.931 kb on + strandat 882.932 kb on - strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.050 kb on - strandat 883.050 kb on - strandat 883.050 kb on - strandat 883.280 kb on + strand, within Rru_A0753at 883.281 kb on - strand, within Rru_A0753at 883.298 kb on + strand, within Rru_A0753at 883.298 kb on + strand, within Rru_A0753at 883.299 kb on - strand, within Rru_A0753at 883.299 kb on - strand, within Rru_A0753at 883.877 kb on + strand, within Rru_A0753at 883.877 kb on + strand, within Rru_A0753at 883.877 kb on + strand, within Rru_A0753at 883.877 kb on + strand, within Rru_A0753at 883.877 kb on + strand, within Rru_A0753at 883.878 kb on - strand, within Rru_A0753at 883.878 kb on - strand, within Rru_A0753at 883.878 kb on - strand, within Rru_A0753at 883.947 kb on - strand, within Rru_A0753at 883.947 kb on - strand, within Rru_A0753at 883.948 kb on + strand, within Rru_A0753at 883.948 kb on + strand, within Rru_A0753at 883.948 kb on + strand, within Rru_A0753at 883.948 kb on + strand, within Rru_A0753at 883.949 kb on - strand, within Rru_A0753at 883.949 kb on - strand, within Rru_A0753at 883.949 kb on - strand, within Rru_A0753at 883.949 kb on - strand, within Rru_A0753at 883.949 kb on - strand, within Rru_A0753at 883.949 kb on - strand, within Rru_A0753at 884.131 kb on + strand, within Rru_A0753at 884.315 kb on + strand, within Rru_A0753at 884.316 kb on - strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.730 kb on - strand, within Rru_A0753at 884.730 kb on - strand, within Rru_A0753at 884.730 kb on - strand, within Rru_A0753at 884.730 kb on - strand, within Rru_A0753at 884.777 kb on + strand, within Rru_A0753at 884.778 kb on - strand, within Rru_A0753at 884.778 kb on - strand, within Rru_A0753at 884.832 kb on - strand, within Rru_A0753at 884.953 kb on + strand, within Rru_A0753at 884.954 kb on - strand, within Rru_A0753at 885.242 kb on + strandat 885.243 kb on - strandat 885.243 kb on - strandat 885.243 kb on - strandat 885.254 kb on + strandat 885.254 kb on + strandat 885.255 kb on - strandat 885.255 kb on - strandat 885.598 kb on + strand, within Rru_A0754at 885.598 kb on + strand, within Rru_A0754at 885.598 kb on + strand, within Rru_A0754at 885.670 kb on - strand, within Rru_A0754at 885.670 kb on - strand, within Rru_A0754at 885.670 kb on - strand, within Rru_A0754at 886.015 kb on + strand, within Rru_A0754at 886.015 kb on + strand, within Rru_A0754at 886.016 kb on - strand, within Rru_A0754at 886.016 kb on - strand, within Rru_A0754at 886.016 kb on - strand, within Rru_A0754at 886.093 kb on - strand, within Rru_A0754at 886.201 kb on + strand, within Rru_A0754at 886.201 kb on + strand, within Rru_A0754at 886.201 kb on + strand, within Rru_A0754at 886.201 kb on + strand, within Rru_A0754at 886.420 kb on + strandat 886.420 kb on + strandat 886.421 kb on - strandat 886.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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882,022 + Rru_A0752 0.41 -3.3
882,023 - Rru_A0752 0.41 -2.1
882,049 + Rru_A0752 0.44 -0.8
882,651 - -2.3
882,651 - -0.5
882,651 - -0.1
882,714 + +0.1
882,715 - +1.3
882,715 - +1.3
882,715 - +2.9
882,715 - -1.3
882,715 - -0.7
882,715 - -0.3
882,718 + -0.5
882,719 - -0.6
882,729 + +0.3
882,729 + -0.0
882,729 + -0.5
882,729 + +0.3
882,730 - -0.2
882,757 + -0.3
882,758 - -0.3
882,758 - -0.2
882,785 - -0.4
882,803 + -0.0
882,803 + -0.5
882,804 - +0.1
882,804 - -0.7
882,809 - +1.3
882,931 + -0.6
882,931 + -0.1
882,931 + -0.4
882,931 + -1.3
882,932 - -1.0
883,049 + -0.1
883,049 + +0.1
883,049 + -1.9
883,049 + -0.4
883,049 + +1.0
883,049 + -0.1
883,050 - -0.2
883,050 - -0.2
883,050 - -0.9
883,280 + Rru_A0753 0.18 -1.3
883,281 - Rru_A0753 0.18 -1.6
883,298 + Rru_A0753 0.19 -0.1
883,298 + Rru_A0753 0.19 -0.5
883,299 - Rru_A0753 0.19 +0.1
883,299 - Rru_A0753 0.19 -1.0
883,877 + Rru_A0753 0.41 -0.4
883,877 + Rru_A0753 0.41 -0.4
883,877 + Rru_A0753 0.41 -0.3
883,877 + Rru_A0753 0.41 -0.9
883,877 + Rru_A0753 0.41 -0.2
883,878 - Rru_A0753 0.41 -0.5
883,878 - Rru_A0753 0.41 -0.0
883,878 - Rru_A0753 0.41 -0.6
883,947 - Rru_A0753 0.44 -1.0
883,947 - Rru_A0753 0.44 -0.3
883,948 + Rru_A0753 0.44 +1.3
883,948 + Rru_A0753 0.44 -0.4
883,948 + Rru_A0753 0.44 -0.1
883,948 + Rru_A0753 0.44 -0.0
883,949 - Rru_A0753 0.44 -0.8
883,949 - Rru_A0753 0.44 -0.7
883,949 - Rru_A0753 0.44 -0.4
883,949 - Rru_A0753 0.44 -0.3
883,949 - Rru_A0753 0.44 +0.0
883,949 - Rru_A0753 0.44 +0.3
884,131 + Rru_A0753 0.51 -0.2
884,315 + Rru_A0753 0.58 +0.2
884,316 - Rru_A0753 0.58 +1.3
884,729 + Rru_A0753 0.73 -0.3
884,729 + Rru_A0753 0.73 -0.8
884,729 + Rru_A0753 0.73 +0.0
884,729 + Rru_A0753 0.73 +1.3
884,729 + Rru_A0753 0.73 -0.3
884,730 - Rru_A0753 0.74 +0.2
884,730 - Rru_A0753 0.74 -0.5
884,730 - Rru_A0753 0.74 -0.1
884,730 - Rru_A0753 0.74 -0.4
884,777 + Rru_A0753 0.75 -0.3
884,778 - Rru_A0753 0.75 -0.2
884,778 - Rru_A0753 0.75 -1.3
884,832 - Rru_A0753 0.77 +0.3
884,953 + Rru_A0753 0.82 +0.1
884,954 - Rru_A0753 0.82 -0.5
885,242 + +0.2
885,243 - -0.1
885,243 - +0.3
885,243 - -0.6
885,254 + -0.1
885,254 + -0.2
885,255 - -1.0
885,255 - -0.6
885,598 + Rru_A0754 0.17 -0.3
885,598 + Rru_A0754 0.17 +0.6
885,598 + Rru_A0754 0.17 +0.0
885,670 - Rru_A0754 0.24 -0.9
885,670 - Rru_A0754 0.24 -0.4
885,670 - Rru_A0754 0.24 +0.3
886,015 + Rru_A0754 0.56 +0.1
886,015 + Rru_A0754 0.56 +0.7
886,016 - Rru_A0754 0.56 +1.3
886,016 - Rru_A0754 0.56 +0.0
886,016 - Rru_A0754 0.56 -0.1
886,093 - Rru_A0754 0.63 -1.2
886,201 + Rru_A0754 0.73 +0.2
886,201 + Rru_A0754 0.73 -0.2
886,201 + Rru_A0754 0.73 -0.0
886,201 + Rru_A0754 0.73 +0.3
886,420 + -0.2
886,420 + -0.7
886,421 - -0.7
886,421 - +0.3

Or see this region's nucleotide sequence