Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0544

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0542 and Rru_A0543 are separated by 12 nucleotidesRru_A0543 and Rru_A0544 are separated by 17 nucleotidesRru_A0544 and Rru_A0545 are separated by 60 nucleotides Rru_A0542: Rru_A0542 - Surface presentation of antigens (SPOA) protein (NCBI), at 638,672 to 639,019 _A0542 Rru_A0543: Rru_A0543 - hypothetical protein (NCBI), at 639,032 to 639,766 _A0543 Rru_A0544: Rru_A0544 - Flagellar motor switch protein FliG (NCBI), at 639,784 to 640,803 _A0544 Rru_A0545: Rru_A0545 - Flagellar FliF M-ring protein (NCBI), at 640,864 to 642,519 _A0545 Position (kb) 639 640 641Strain fitness (log2 ratio) -2 -1 0 1at 638.852 kb on - strand, within Rru_A0542at 638.852 kb on - strand, within Rru_A0542at 638.895 kb on + strand, within Rru_A0542at 638.896 kb on - strand, within Rru_A0542at 639.033 kb on + strandat 639.034 kb on - strandat 639.243 kb on + strand, within Rru_A0543at 639.287 kb on - strand, within Rru_A0543at 639.454 kb on + strand, within Rru_A0543at 639.571 kb on + strand, within Rru_A0543at 639.572 kb on - strand, within Rru_A0543at 639.572 kb on - strand, within Rru_A0543at 639.585 kb on + strand, within Rru_A0543at 639.585 kb on + strand, within Rru_A0543at 639.585 kb on + strand, within Rru_A0543at 639.586 kb on - strand, within Rru_A0543at 639.586 kb on - strand, within Rru_A0543at 639.586 kb on - strand, within Rru_A0543at 639.586 kb on - strand, within Rru_A0543at 639.717 kb on + strandat 639.717 kb on + strandat 639.717 kb on + strandat 639.718 kb on - strandat 639.718 kb on - strandat 639.718 kb on - strandat 639.718 kb on - strandat 639.718 kb on - strandat 639.718 kb on - strandat 639.788 kb on + strandat 640.427 kb on + strand, within Rru_A0544at 640.427 kb on + strand, within Rru_A0544at 640.427 kb on + strand, within Rru_A0544at 640.565 kb on + strand, within Rru_A0544at 640.566 kb on - strand, within Rru_A0544at 640.566 kb on - strand, within Rru_A0544at 640.566 kb on - strand, within Rru_A0544at 640.566 kb on - strand, within Rru_A0544at 640.566 kb on - strand, within Rru_A0544at 640.749 kb on + strandat 640.749 kb on + strandat 640.749 kb on + strandat 640.750 kb on - strandat 640.750 kb on - strandat 640.750 kb on - strandat 640.750 kb on - strandat 640.750 kb on - strandat 640.750 kb on - strandat 640.750 kb on - strandat 640.750 kb on - strandat 640.750 kb on - strandat 640.781 kb on + strandat 640.782 kb on - strandat 640.877 kb on + strandat 641.343 kb on - strand, within Rru_A0545at 641.439 kb on + strand, within Rru_A0545at 641.522 kb on + strand, within Rru_A0545at 641.522 kb on + strand, within Rru_A0545at 641.522 kb on + strand, within Rru_A0545at 641.523 kb on - strand, within Rru_A0545at 641.523 kb on - strand, within Rru_A0545at 641.721 kb on + strand, within Rru_A0545at 641.721 kb on + strand, within Rru_A0545at 641.721 kb on + strand, within Rru_A0545at 641.722 kb on - strand, within Rru_A0545at 641.722 kb on - strand, within Rru_A0545

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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638,852 - Rru_A0542 0.52 +0.3
638,852 - Rru_A0542 0.52 +0.6
638,895 + Rru_A0542 0.64 +0.1
638,896 - Rru_A0542 0.64 -0.7
639,033 + +1.0
639,034 - -1.0
639,243 + Rru_A0543 0.29 -2.3
639,287 - Rru_A0543 0.35 +0.4
639,454 + Rru_A0543 0.57 +0.1
639,571 + Rru_A0543 0.73 +0.7
639,572 - Rru_A0543 0.73 +0.7
639,572 - Rru_A0543 0.73 -0.5
639,585 + Rru_A0543 0.75 -0.3
639,585 + Rru_A0543 0.75 -0.3
639,585 + Rru_A0543 0.75 +0.6
639,586 - Rru_A0543 0.75 -0.2
639,586 - Rru_A0543 0.75 +0.0
639,586 - Rru_A0543 0.75 -0.4
639,586 - Rru_A0543 0.75 -0.4
639,717 + +0.1
639,717 + -0.4
639,717 + +0.4
639,718 - -0.4
639,718 - -0.3
639,718 - -1.0
639,718 - +0.0
639,718 - +0.5
639,718 - +0.2
639,788 + +0.6
640,427 + Rru_A0544 0.63 -0.3
640,427 + Rru_A0544 0.63 +1.3
640,427 + Rru_A0544 0.63 -0.7
640,565 + Rru_A0544 0.77 +0.5
640,566 - Rru_A0544 0.77 -0.3
640,566 - Rru_A0544 0.77 -0.4
640,566 - Rru_A0544 0.77 -0.6
640,566 - Rru_A0544 0.77 -0.9
640,566 - Rru_A0544 0.77 -1.1
640,749 + -0.4
640,749 + +0.3
640,749 + +0.5
640,750 - -0.5
640,750 - +1.0
640,750 - -0.1
640,750 - +0.7
640,750 - +1.3
640,750 - -0.1
640,750 - -0.8
640,750 - -2.4
640,750 - -0.7
640,781 + -0.2
640,782 - -0.6
640,877 + +1.3
641,343 - Rru_A0545 0.29 +0.1
641,439 + Rru_A0545 0.35 +1.3
641,522 + Rru_A0545 0.40 -0.4
641,522 + Rru_A0545 0.40 +0.1
641,522 + Rru_A0545 0.40 -0.6
641,523 - Rru_A0545 0.40 -2.3
641,523 - Rru_A0545 0.40 -0.2
641,721 + Rru_A0545 0.52 +0.5
641,721 + Rru_A0545 0.52 +1.3
641,721 + Rru_A0545 0.52 -1.3
641,722 - Rru_A0545 0.52 -0.1
641,722 - Rru_A0545 0.52 +1.3

Or see this region's nucleotide sequence