Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0175

Experiment: SMN_rich

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0174 and Rru_A0175 are separated by 288 nucleotidesRru_A0175 and Rru_A0176 are separated by 79 nucleotides Rru_A0174: Rru_A0174 - hypothetical protein (NCBI), at 204,363 to 206,030 _A0174 Rru_A0175: Rru_A0175 - CRISPR-associated helicase Cas3, core (NCBI), at 206,319 to 209,081 _A0175 Rru_A0176: Rru_A0176 - Aminotransferase class-III (NCBI), at 209,161 to 210,102 _A0176 Position (kb) 206 207 208 209 210Strain fitness (log2 ratio) -1 0 1 2at 205.543 kb on + strand, within Rru_A0174at 205.543 kb on + strand, within Rru_A0174at 205.544 kb on - strand, within Rru_A0174at 205.544 kb on - strand, within Rru_A0174at 205.576 kb on + strand, within Rru_A0174at 205.665 kb on + strand, within Rru_A0174at 205.665 kb on + strand, within Rru_A0174at 205.666 kb on - strand, within Rru_A0174at 205.666 kb on - strand, within Rru_A0174at 205.666 kb on - strand, within Rru_A0174at 205.666 kb on - strand, within Rru_A0174at 205.709 kb on + strand, within Rru_A0174at 205.709 kb on + strand, within Rru_A0174at 205.710 kb on - strand, within Rru_A0174at 205.852 kb on + strand, within Rru_A0174at 205.853 kb on - strand, within Rru_A0174at 205.866 kb on + strandat 205.947 kb on - strandat 206.021 kb on + strandat 206.021 kb on + strandat 206.022 kb on - strandat 206.022 kb on - strandat 206.022 kb on - strandat 206.022 kb on - strandat 206.057 kb on - strandat 206.057 kb on - strandat 206.177 kb on + strandat 206.178 kb on - strandat 206.180 kb on + strandat 206.180 kb on + strandat 206.180 kb on + strandat 206.181 kb on - strandat 206.196 kb on - strandat 206.196 kb on - strandat 206.237 kb on + strandat 206.238 kb on - strandat 206.240 kb on + strandat 206.241 kb on - strandat 206.246 kb on + strandat 206.294 kb on + strandat 206.309 kb on + strandat 206.310 kb on - strandat 206.310 kb on - strandat 206.362 kb on + strandat 206.363 kb on - strandat 206.363 kb on - strandat 206.547 kb on + strandat 206.711 kb on - strand, within Rru_A0175at 206.740 kb on + strand, within Rru_A0175at 206.740 kb on + strand, within Rru_A0175at 206.741 kb on - strand, within Rru_A0175at 206.741 kb on - strand, within Rru_A0175at 206.844 kb on + strand, within Rru_A0175at 206.845 kb on - strand, within Rru_A0175at 206.845 kb on - strand, within Rru_A0175at 206.966 kb on - strand, within Rru_A0175at 206.966 kb on - strand, within Rru_A0175at 207.107 kb on + strand, within Rru_A0175at 207.107 kb on + strand, within Rru_A0175at 207.108 kb on - strand, within Rru_A0175at 207.343 kb on + strand, within Rru_A0175at 207.343 kb on + strand, within Rru_A0175at 207.344 kb on - strand, within Rru_A0175at 207.344 kb on - strand, within Rru_A0175at 207.565 kb on + strand, within Rru_A0175at 207.566 kb on - strand, within Rru_A0175at 207.679 kb on + strand, within Rru_A0175at 207.679 kb on + strand, within Rru_A0175at 207.679 kb on + strand, within Rru_A0175at 207.679 kb on + strand, within Rru_A0175at 207.679 kb on + strand, within Rru_A0175at 207.680 kb on - strand, within Rru_A0175at 207.688 kb on + strand, within Rru_A0175at 207.688 kb on + strand, within Rru_A0175at 207.688 kb on + strand, within Rru_A0175at 207.688 kb on + strand, within Rru_A0175at 207.688 kb on + strand, within Rru_A0175at 207.689 kb on - strand, within Rru_A0175at 207.828 kb on - strand, within Rru_A0175at 207.896 kb on - strand, within Rru_A0175at 207.899 kb on - strand, within Rru_A0175at 207.899 kb on - strand, within Rru_A0175at 207.980 kb on + strand, within Rru_A0175at 207.980 kb on + strand, within Rru_A0175at 207.981 kb on - strand, within Rru_A0175at 207.981 kb on - strand, within Rru_A0175at 208.031 kb on - strand, within Rru_A0175at 208.160 kb on + strand, within Rru_A0175at 208.160 kb on + strand, within Rru_A0175at 208.160 kb on + strand, within Rru_A0175at 208.161 kb on - strand, within Rru_A0175at 208.161 kb on - strand, within Rru_A0175at 208.161 kb on - strand, within Rru_A0175at 208.161 kb on - strand, within Rru_A0175at 208.161 kb on - strand, within Rru_A0175at 208.162 kb on + strand, within Rru_A0175at 208.162 kb on + strand, within Rru_A0175at 208.162 kb on + strand, within Rru_A0175at 208.162 kb on + strand, within Rru_A0175at 208.163 kb on - strand, within Rru_A0175at 208.163 kb on - strand, within Rru_A0175at 208.333 kb on + strand, within Rru_A0175at 208.334 kb on - strand, within Rru_A0175at 208.334 kb on - strand, within Rru_A0175at 208.364 kb on - strand, within Rru_A0175at 208.916 kb on - strandat 208.916 kb on - strandat 208.977 kb on + strandat 208.978 kb on - strandat 208.978 kb on - strandat 208.978 kb on - strandat 209.140 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich
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205,543 + Rru_A0174 0.71 +1.9
205,543 + Rru_A0174 0.71 -0.2
205,544 - Rru_A0174 0.71 -1.0
205,544 - Rru_A0174 0.71 +0.1
205,576 + Rru_A0174 0.73 +1.0
205,665 + Rru_A0174 0.78 -0.1
205,665 + Rru_A0174 0.78 +0.0
205,666 - Rru_A0174 0.78 -1.5
205,666 - Rru_A0174 0.78 +0.1
205,666 - Rru_A0174 0.78 +0.0
205,666 - Rru_A0174 0.78 -0.2
205,709 + Rru_A0174 0.81 +0.3
205,709 + Rru_A0174 0.81 -0.3
205,710 - Rru_A0174 0.81 -1.7
205,852 + Rru_A0174 0.89 -0.1
205,853 - Rru_A0174 0.89 +0.1
205,866 + +1.3
205,947 - -0.2
206,021 + -0.3
206,021 + +0.3
206,022 - -0.4
206,022 - -0.6
206,022 - -0.1
206,022 - -0.9
206,057 - +0.4
206,057 - +1.3
206,177 + +1.3
206,178 - +1.3
206,180 + -0.4
206,180 + +0.5
206,180 + +0.8
206,181 - -0.7
206,196 - +0.2
206,196 - -0.8
206,237 + +0.3
206,238 - -0.3
206,240 + -0.4
206,241 - -0.8
206,246 + -1.5
206,294 + -0.1
206,309 + +0.0
206,310 - -0.1
206,310 - -1.5
206,362 + +0.8
206,363 - +0.3
206,363 - +0.0
206,547 + -0.3
206,711 - Rru_A0175 0.14 -0.9
206,740 + Rru_A0175 0.15 -0.6
206,740 + Rru_A0175 0.15 -0.1
206,741 - Rru_A0175 0.15 +0.1
206,741 - Rru_A0175 0.15 -0.1
206,844 + Rru_A0175 0.19 -1.6
206,845 - Rru_A0175 0.19 -0.0
206,845 - Rru_A0175 0.19 -0.0
206,966 - Rru_A0175 0.23 -1.1
206,966 - Rru_A0175 0.23 +0.0
207,107 + Rru_A0175 0.29 -0.3
207,107 + Rru_A0175 0.29 -0.1
207,108 - Rru_A0175 0.29 +0.4
207,343 + Rru_A0175 0.37 -0.4
207,343 + Rru_A0175 0.37 -0.3
207,344 - Rru_A0175 0.37 +0.3
207,344 - Rru_A0175 0.37 +0.6
207,565 + Rru_A0175 0.45 +1.2
207,566 - Rru_A0175 0.45 +1.3
207,679 + Rru_A0175 0.49 -0.2
207,679 + Rru_A0175 0.49 -0.5
207,679 + Rru_A0175 0.49 +0.3
207,679 + Rru_A0175 0.49 +0.0
207,679 + Rru_A0175 0.49 +0.1
207,680 - Rru_A0175 0.49 -0.3
207,688 + Rru_A0175 0.50 -0.1
207,688 + Rru_A0175 0.50 -0.3
207,688 + Rru_A0175 0.50 +0.0
207,688 + Rru_A0175 0.50 -0.3
207,688 + Rru_A0175 0.50 +0.2
207,689 - Rru_A0175 0.50 +0.3
207,828 - Rru_A0175 0.55 +1.3
207,896 - Rru_A0175 0.57 +0.3
207,899 - Rru_A0175 0.57 -0.1
207,899 - Rru_A0175 0.57 +0.1
207,980 + Rru_A0175 0.60 +0.8
207,980 + Rru_A0175 0.60 +0.5
207,981 - Rru_A0175 0.60 +0.4
207,981 - Rru_A0175 0.60 +0.0
208,031 - Rru_A0175 0.62 -0.3
208,160 + Rru_A0175 0.67 -0.1
208,160 + Rru_A0175 0.67 +0.3
208,160 + Rru_A0175 0.67 +0.5
208,161 - Rru_A0175 0.67 -0.5
208,161 - Rru_A0175 0.67 -0.4
208,161 - Rru_A0175 0.67 +1.3
208,161 - Rru_A0175 0.67 +0.7
208,161 - Rru_A0175 0.67 -0.2
208,162 + Rru_A0175 0.67 +0.3
208,162 + Rru_A0175 0.67 +0.4
208,162 + Rru_A0175 0.67 -0.2
208,162 + Rru_A0175 0.67 +1.3
208,163 - Rru_A0175 0.67 +1.0
208,163 - Rru_A0175 0.67 +0.1
208,333 + Rru_A0175 0.73 +0.5
208,334 - Rru_A0175 0.73 -0.4
208,334 - Rru_A0175 0.73 +1.3
208,364 - Rru_A0175 0.74 -0.1
208,916 - +0.5
208,916 - -0.4
208,977 + -0.4
208,978 - -0.3
208,978 - +0.1
208,978 - -0.1
209,140 + -1.4

Or see this region's nucleotide sequence