Strain Fitness in Pantoea sp. MT58 around IAI47_04780

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04775 and IAI47_04780 overlap by 1 nucleotidesIAI47_04780 and IAI47_04790 are separated by 597 nucleotides IAI47_04775: IAI47_04775 - SIR2 family protein, at 1,004,131 to 1,005,252 _04775 IAI47_04780: IAI47_04780 - tyrosine-type recombinase/integrase, at 1,005,252 to 1,006,454 _04780 IAI47_04790: IAI47_04790 - SsrA-binding protein SmpB, at 1,007,052 to 1,007,534 _04790 Position (kb) 1005 1006 1007Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1004.277 kb on + strand, within IAI47_04775at 1004.609 kb on - strand, within IAI47_04775at 1004.895 kb on - strand, within IAI47_04775at 1004.901 kb on + strand, within IAI47_04775at 1004.902 kb on - strand, within IAI47_04775at 1005.131 kb on + strand, within IAI47_04775at 1005.155 kb on - strandat 1005.159 kb on + strandat 1005.163 kb on + strandat 1005.164 kb on - strandat 1005.164 kb on - strandat 1005.168 kb on - strandat 1005.168 kb on - strandat 1005.168 kb on - strandat 1005.168 kb on - strandat 1005.220 kb on - strandat 1005.253 kb on + strandat 1005.253 kb on + strandat 1005.258 kb on + strandat 1005.272 kb on + strandat 1005.273 kb on - strandat 1005.273 kb on - strandat 1005.300 kb on + strandat 1005.335 kb on + strandat 1005.337 kb on + strandat 1005.360 kb on - strandat 1005.373 kb on - strand, within IAI47_04780at 1005.384 kb on + strand, within IAI47_04780at 1005.388 kb on - strand, within IAI47_04780at 1005.388 kb on - strand, within IAI47_04780at 1005.438 kb on + strand, within IAI47_04780at 1005.439 kb on - strand, within IAI47_04780at 1005.451 kb on - strand, within IAI47_04780at 1005.458 kb on + strand, within IAI47_04780at 1005.473 kb on + strand, within IAI47_04780at 1005.473 kb on + strand, within IAI47_04780at 1005.474 kb on - strand, within IAI47_04780at 1005.480 kb on + strand, within IAI47_04780at 1005.491 kb on + strand, within IAI47_04780at 1005.491 kb on + strand, within IAI47_04780at 1005.491 kb on + strand, within IAI47_04780at 1005.492 kb on - strand, within IAI47_04780at 1005.492 kb on - strand, within IAI47_04780at 1005.509 kb on + strand, within IAI47_04780at 1005.509 kb on + strand, within IAI47_04780at 1005.509 kb on + strand, within IAI47_04780at 1005.510 kb on - strand, within IAI47_04780at 1005.510 kb on - strand, within IAI47_04780at 1005.542 kb on + strand, within IAI47_04780at 1005.543 kb on - strand, within IAI47_04780at 1005.543 kb on - strand, within IAI47_04780at 1005.563 kb on + strand, within IAI47_04780at 1005.563 kb on + strand, within IAI47_04780at 1005.563 kb on + strand, within IAI47_04780at 1005.564 kb on - strand, within IAI47_04780at 1005.564 kb on - strand, within IAI47_04780at 1005.564 kb on - strand, within IAI47_04780at 1005.564 kb on - strand, within IAI47_04780at 1005.564 kb on - strand, within IAI47_04780at 1005.564 kb on - strand, within IAI47_04780at 1005.603 kb on + strand, within IAI47_04780at 1005.603 kb on + strand, within IAI47_04780at 1005.609 kb on + strand, within IAI47_04780at 1005.609 kb on + strand, within IAI47_04780at 1005.609 kb on + strand, within IAI47_04780at 1005.609 kb on + strand, within IAI47_04780at 1005.609 kb on + strand, within IAI47_04780at 1005.610 kb on - strand, within IAI47_04780at 1005.610 kb on - strand, within IAI47_04780at 1005.715 kb on - strand, within IAI47_04780at 1005.715 kb on - strand, within IAI47_04780at 1005.740 kb on + strand, within IAI47_04780at 1005.740 kb on + strand, within IAI47_04780at 1005.741 kb on - strand, within IAI47_04780at 1005.775 kb on - strand, within IAI47_04780at 1005.789 kb on + strand, within IAI47_04780at 1005.789 kb on + strand, within IAI47_04780at 1005.789 kb on + strand, within IAI47_04780at 1005.789 kb on + strand, within IAI47_04780at 1005.790 kb on - strand, within IAI47_04780at 1005.790 kb on - strand, within IAI47_04780at 1005.790 kb on - strand, within IAI47_04780at 1005.876 kb on - strand, within IAI47_04780at 1005.904 kb on + strand, within IAI47_04780at 1005.904 kb on + strand, within IAI47_04780at 1005.905 kb on - strand, within IAI47_04780at 1005.923 kb on + strand, within IAI47_04780at 1005.969 kb on + strand, within IAI47_04780at 1006.043 kb on + strand, within IAI47_04780at 1006.043 kb on + strand, within IAI47_04780at 1006.043 kb on + strand, within IAI47_04780at 1006.043 kb on + strand, within IAI47_04780at 1006.043 kb on + strand, within IAI47_04780at 1006.044 kb on - strand, within IAI47_04780at 1006.044 kb on - strand, within IAI47_04780at 1006.044 kb on - strand, within IAI47_04780at 1006.044 kb on - strand, within IAI47_04780at 1006.044 kb on - strand, within IAI47_04780at 1006.067 kb on + strand, within IAI47_04780at 1006.067 kb on + strand, within IAI47_04780at 1006.068 kb on - strand, within IAI47_04780at 1006.078 kb on + strand, within IAI47_04780at 1006.079 kb on - strand, within IAI47_04780at 1006.079 kb on - strand, within IAI47_04780at 1006.103 kb on + strand, within IAI47_04780at 1006.103 kb on + strand, within IAI47_04780at 1006.104 kb on - strand, within IAI47_04780at 1006.104 kb on - strand, within IAI47_04780at 1006.104 kb on - strand, within IAI47_04780at 1006.104 kb on - strand, within IAI47_04780at 1006.142 kb on + strand, within IAI47_04780at 1006.143 kb on - strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.171 kb on - strand, within IAI47_04780at 1006.213 kb on - strand, within IAI47_04780at 1006.213 kb on - strand, within IAI47_04780at 1006.222 kb on + strand, within IAI47_04780at 1006.222 kb on + strand, within IAI47_04780at 1006.223 kb on - strand, within IAI47_04780at 1006.223 kb on - strand, within IAI47_04780at 1006.223 kb on - strand, within IAI47_04780at 1006.223 kb on - strand, within IAI47_04780at 1006.246 kb on - strand, within IAI47_04780at 1006.268 kb on - strand, within IAI47_04780at 1006.268 kb on - strand, within IAI47_04780at 1006.275 kb on + strand, within IAI47_04780at 1006.276 kb on - strand, within IAI47_04780at 1006.276 kb on - strand, within IAI47_04780at 1006.276 kb on - strand, within IAI47_04780at 1006.276 kb on - strand, within IAI47_04780at 1006.295 kb on + strand, within IAI47_04780at 1006.296 kb on - strand, within IAI47_04780at 1006.296 kb on - strand, within IAI47_04780at 1006.296 kb on - strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.338 kb on - strandat 1006.338 kb on - strandat 1006.406 kb on + strandat 1006.407 kb on - strandat 1006.407 kb on - strandat 1006.407 kb on - strandat 1006.407 kb on - strandat 1006.407 kb on - strandat 1006.471 kb on + strandat 1006.472 kb on - strandat 1006.479 kb on - strandat 1006.491 kb on + strandat 1006.492 kb on - strandat 1006.498 kb on + strandat 1006.498 kb on + strandat 1006.501 kb on - strandat 1006.526 kb on + strandat 1006.527 kb on - strandat 1006.560 kb on + strandat 1007.371 kb on + strand, within IAI47_04790

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50
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1,004,277 + IAI47_04775 0.13 -1.1
1,004,609 - IAI47_04775 0.43 -0.9
1,004,895 - IAI47_04775 0.68 -0.3
1,004,901 + IAI47_04775 0.69 -0.3
1,004,902 - IAI47_04775 0.69 +0.1
1,005,131 + IAI47_04775 0.89 -1.0
1,005,155 - +1.2
1,005,159 + -1.4
1,005,163 + -0.5
1,005,164 - -1.2
1,005,164 - -0.1
1,005,168 - -0.8
1,005,168 - -0.3
1,005,168 - -0.4
1,005,168 - -0.1
1,005,220 - +1.1
1,005,253 + -1.7
1,005,253 + -1.2
1,005,258 + +0.9
1,005,272 + +0.0
1,005,273 - +0.3
1,005,273 - -0.9
1,005,300 + -2.1
1,005,335 + -0.3
1,005,337 + -0.5
1,005,360 - -0.5
1,005,373 - IAI47_04780 0.10 -0.3
1,005,384 + IAI47_04780 0.11 +0.4
1,005,388 - IAI47_04780 0.11 -1.8
1,005,388 - IAI47_04780 0.11 -0.3
1,005,438 + IAI47_04780 0.15 +1.9
1,005,439 - IAI47_04780 0.16 -0.1
1,005,451 - IAI47_04780 0.17 -0.4
1,005,458 + IAI47_04780 0.17 -0.1
1,005,473 + IAI47_04780 0.18 -1.3
1,005,473 + IAI47_04780 0.18 +1.1
1,005,474 - IAI47_04780 0.18 +1.4
1,005,480 + IAI47_04780 0.19 -0.2
1,005,491 + IAI47_04780 0.20 -1.3
1,005,491 + IAI47_04780 0.20 -2.2
1,005,491 + IAI47_04780 0.20 -1.6
1,005,492 - IAI47_04780 0.20 +0.1
1,005,492 - IAI47_04780 0.20 -1.5
1,005,509 + IAI47_04780 0.21 -0.4
1,005,509 + IAI47_04780 0.21 -0.3
1,005,509 + IAI47_04780 0.21 +0.2
1,005,510 - IAI47_04780 0.21 -2.5
1,005,510 - IAI47_04780 0.21 -0.2
1,005,542 + IAI47_04780 0.24 -0.2
1,005,543 - IAI47_04780 0.24 -0.3
1,005,543 - IAI47_04780 0.24 -0.1
1,005,563 + IAI47_04780 0.26 -0.9
1,005,563 + IAI47_04780 0.26 -0.2
1,005,563 + IAI47_04780 0.26 -0.7
1,005,564 - IAI47_04780 0.26 -1.3
1,005,564 - IAI47_04780 0.26 +0.1
1,005,564 - IAI47_04780 0.26 +0.2
1,005,564 - IAI47_04780 0.26 +0.6
1,005,564 - IAI47_04780 0.26 +0.5
1,005,564 - IAI47_04780 0.26 +1.3
1,005,603 + IAI47_04780 0.29 -0.9
1,005,603 + IAI47_04780 0.29 +0.1
1,005,609 + IAI47_04780 0.30 -1.7
1,005,609 + IAI47_04780 0.30 +0.3
1,005,609 + IAI47_04780 0.30 -1.0
1,005,609 + IAI47_04780 0.30 -0.8
1,005,609 + IAI47_04780 0.30 +1.5
1,005,610 - IAI47_04780 0.30 -0.9
1,005,610 - IAI47_04780 0.30 -1.1
1,005,715 - IAI47_04780 0.38 +0.3
1,005,715 - IAI47_04780 0.38 -0.6
1,005,740 + IAI47_04780 0.41 -1.5
1,005,740 + IAI47_04780 0.41 +0.4
1,005,741 - IAI47_04780 0.41 +0.0
1,005,775 - IAI47_04780 0.43 -1.2
1,005,789 + IAI47_04780 0.45 +1.6
1,005,789 + IAI47_04780 0.45 -1.6
1,005,789 + IAI47_04780 0.45 -0.6
1,005,789 + IAI47_04780 0.45 -0.7
1,005,790 - IAI47_04780 0.45 -1.2
1,005,790 - IAI47_04780 0.45 -0.0
1,005,790 - IAI47_04780 0.45 -0.7
1,005,876 - IAI47_04780 0.52 +0.0
1,005,904 + IAI47_04780 0.54 -1.2
1,005,904 + IAI47_04780 0.54 -0.6
1,005,905 - IAI47_04780 0.54 -0.4
1,005,923 + IAI47_04780 0.56 -0.2
1,005,969 + IAI47_04780 0.60 +0.3
1,006,043 + IAI47_04780 0.66 -0.9
1,006,043 + IAI47_04780 0.66 -1.1
1,006,043 + IAI47_04780 0.66 -0.0
1,006,043 + IAI47_04780 0.66 +0.5
1,006,043 + IAI47_04780 0.66 +0.0
1,006,044 - IAI47_04780 0.66 -0.1
1,006,044 - IAI47_04780 0.66 +1.3
1,006,044 - IAI47_04780 0.66 -1.3
1,006,044 - IAI47_04780 0.66 +0.6
1,006,044 - IAI47_04780 0.66 -0.6
1,006,067 + IAI47_04780 0.68 -1.4
1,006,067 + IAI47_04780 0.68 -0.9
1,006,068 - IAI47_04780 0.68 +0.3
1,006,078 + IAI47_04780 0.69 +1.0
1,006,079 - IAI47_04780 0.69 +0.5
1,006,079 - IAI47_04780 0.69 -0.5
1,006,103 + IAI47_04780 0.71 -0.6
1,006,103 + IAI47_04780 0.71 -0.6
1,006,104 - IAI47_04780 0.71 -0.1
1,006,104 - IAI47_04780 0.71 -0.1
1,006,104 - IAI47_04780 0.71 -0.2
1,006,104 - IAI47_04780 0.71 +0.2
1,006,142 + IAI47_04780 0.74 +0.8
1,006,143 - IAI47_04780 0.74 -0.2
1,006,170 + IAI47_04780 0.76 +0.0
1,006,170 + IAI47_04780 0.76 +0.6
1,006,170 + IAI47_04780 0.76 +2.9
1,006,170 + IAI47_04780 0.76 -0.1
1,006,170 + IAI47_04780 0.76 -1.1
1,006,170 + IAI47_04780 0.76 -0.1
1,006,170 + IAI47_04780 0.76 -1.4
1,006,170 + IAI47_04780 0.76 -1.6
1,006,170 + IAI47_04780 0.76 -1.1
1,006,170 + IAI47_04780 0.76 +0.5
1,006,171 - IAI47_04780 0.76 -0.0
1,006,213 - IAI47_04780 0.80 +0.7
1,006,213 - IAI47_04780 0.80 -0.9
1,006,222 + IAI47_04780 0.81 +1.0
1,006,222 + IAI47_04780 0.81 -0.2
1,006,223 - IAI47_04780 0.81 -1.0
1,006,223 - IAI47_04780 0.81 +1.3
1,006,223 - IAI47_04780 0.81 -0.3
1,006,223 - IAI47_04780 0.81 -0.6
1,006,246 - IAI47_04780 0.83 -1.2
1,006,268 - IAI47_04780 0.84 -1.4
1,006,268 - IAI47_04780 0.84 +1.5
1,006,275 + IAI47_04780 0.85 -0.8
1,006,276 - IAI47_04780 0.85 -0.6
1,006,276 - IAI47_04780 0.85 +0.0
1,006,276 - IAI47_04780 0.85 -0.1
1,006,276 - IAI47_04780 0.85 -0.4
1,006,295 + IAI47_04780 0.87 +0.3
1,006,296 - IAI47_04780 0.87 -1.1
1,006,296 - IAI47_04780 0.87 +0.4
1,006,296 - IAI47_04780 0.87 +0.5
1,006,298 + IAI47_04780 0.87 +1.1
1,006,298 + IAI47_04780 0.87 -0.3
1,006,298 + IAI47_04780 0.87 +0.3
1,006,298 + IAI47_04780 0.87 +0.1
1,006,298 + IAI47_04780 0.87 -0.6
1,006,299 - IAI47_04780 0.87 -0.1
1,006,299 - IAI47_04780 0.87 +1.3
1,006,299 - IAI47_04780 0.87 +0.2
1,006,299 - IAI47_04780 0.87 -0.6
1,006,299 - IAI47_04780 0.87 +0.3
1,006,301 + IAI47_04780 0.87 -0.4
1,006,301 + IAI47_04780 0.87 -0.1
1,006,301 + IAI47_04780 0.87 +0.5
1,006,301 + IAI47_04780 0.87 -0.4
1,006,301 + IAI47_04780 0.87 -0.6
1,006,301 + IAI47_04780 0.87 +0.3
1,006,302 - IAI47_04780 0.87 +1.1
1,006,302 - IAI47_04780 0.87 -0.6
1,006,302 - IAI47_04780 0.87 -0.5
1,006,302 - IAI47_04780 0.87 -0.7
1,006,302 - IAI47_04780 0.87 -0.8
1,006,302 - IAI47_04780 0.87 -1.6
1,006,302 - IAI47_04780 0.87 -0.5
1,006,302 - IAI47_04780 0.87 -0.4
1,006,338 - +0.9
1,006,338 - +0.2
1,006,406 + -0.0
1,006,407 - -0.3
1,006,407 - +0.1
1,006,407 - +0.1
1,006,407 - +0.5
1,006,407 - -0.1
1,006,471 + -0.7
1,006,472 - +1.5
1,006,479 - -0.8
1,006,491 + -0.9
1,006,492 - -0.8
1,006,498 + +0.3
1,006,498 + -0.2
1,006,501 - +0.5
1,006,526 + +2.9
1,006,527 - -0.3
1,006,560 + -0.1
1,007,371 + IAI47_04790 0.66 +1.7

Or see this region's nucleotide sequence