Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04000 and PGA1_c04010 are separated by 162 nucleotides PGA1_c04010 and PGA1_c04020 are separated by 86 nucleotides PGA1_c04020 and PGA1_c04030 are separated by 126 nucleotides PGA1_c04030 and PGA1_c04040 are separated by 62 nucleotides
PGA1_c04000: PGA1_c04000 - nitrogen fixation protein nifU-like protein, at 386,678 to 387,241
_c04000
PGA1_c04010: PGA1_c04010 - putative universal stress protein, at 387,404 to 387,859
_c04010
PGA1_c04020: PGA1_c04020 - putative branched-chain-amino-acid aminotransferase, at 387,946 to 388,812
_c04020
PGA1_c04030: PGA1_c04030 - phenylacetic acid degradation protein paaA-like protein, at 388,939 to 389,706
_c04030
PGA1_c04040: PGA1_c04040 - phenylacetic acid degradation NADH oxidoreductase PaaE, at 389,769 to 390,842
_c04040
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.341 kb on + strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.381 kb on - strand at 387.514 kb on - strand, within PGA1_c04010 at 387.601 kb on - strand, within PGA1_c04010 at 387.629 kb on + strand, within PGA1_c04010 at 387.828 kb on + strand at 387.875 kb on - strand at 387.883 kb on - strand at 387.901 kb on + strand at 387.912 kb on + strand at 387.917 kb on - strand at 387.971 kb on + strand at 387.973 kb on - strand at 388.147 kb on - strand, within PGA1_c04020 at 388.212 kb on + strand, within PGA1_c04020 at 388.338 kb on + strand, within PGA1_c04020 at 388.373 kb on - strand, within PGA1_c04020 at 388.388 kb on - strand, within PGA1_c04020 at 388.422 kb on - strand, within PGA1_c04020 at 388.446 kb on + strand, within PGA1_c04020 at 388.446 kb on + strand, within PGA1_c04020 at 388.454 kb on - strand, within PGA1_c04020 at 388.502 kb on - strand, within PGA1_c04020 at 388.645 kb on - strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.673 kb on - strand, within PGA1_c04020 at 388.688 kb on - strand, within PGA1_c04020 at 388.917 kb on - strand at 388.922 kb on - strand at 388.969 kb on - strand at 389.013 kb on + strand at 389.013 kb on + strand at 389.013 kb on + strand at 389.021 kb on - strand, within PGA1_c04030 at 389.021 kb on - strand, within PGA1_c04030 at 389.021 kb on - strand, within PGA1_c04030 at 389.033 kb on + strand, within PGA1_c04030 at 389.045 kb on + strand, within PGA1_c04030 at 389.064 kb on + strand, within PGA1_c04030 at 389.071 kb on + strand, within PGA1_c04030 at 389.168 kb on - strand, within PGA1_c04030 at 389.169 kb on - strand, within PGA1_c04030 at 389.194 kb on + strand, within PGA1_c04030 at 389.202 kb on - strand, within PGA1_c04030 at 389.202 kb on - strand, within PGA1_c04030 at 389.323 kb on - strand, within PGA1_c04030 at 389.343 kb on + strand, within PGA1_c04030 at 389.371 kb on + strand, within PGA1_c04030 at 389.379 kb on - strand, within PGA1_c04030 at 389.379 kb on - strand, within PGA1_c04030 at 389.390 kb on - strand, within PGA1_c04030 at 389.401 kb on - strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.456 kb on + strand, within PGA1_c04030 at 389.474 kb on + strand, within PGA1_c04030 at 389.516 kb on + strand, within PGA1_c04030 at 389.562 kb on + strand, within PGA1_c04030 at 389.619 kb on - strand, within PGA1_c04030 at 389.629 kb on - strand, within PGA1_c04030 at 389.648 kb on - strand at 389.717 kb on + strand at 389.723 kb on - strand at 389.725 kb on - strand at 389.806 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 387,259 - +0.1 387,259 - -0.6 387,259 - +0.1 387,259 - -0.6 387,341 + +0.1 387,349 - +0.3 387,349 - +0.6 387,349 - -0.7 387,349 - +0.0 387,381 - +0.3 387,514 - PGA1_c04010 0.24 +1.5 387,601 - PGA1_c04010 0.43 +1.7 387,629 + PGA1_c04010 0.49 -0.0 387,828 + +0.7 387,875 - +0.4 387,883 - +0.2 387,901 + +0.4 387,912 + +0.6 387,917 - -0.1 387,971 + +0.4 387,973 - +1.2 388,147 - PGA1_c04020 0.23 -0.6 388,212 + PGA1_c04020 0.31 -0.5 388,338 + PGA1_c04020 0.45 +0.4 388,373 - PGA1_c04020 0.49 -0.2 388,388 - PGA1_c04020 0.51 -2.4 388,422 - PGA1_c04020 0.55 -0.6 388,446 + PGA1_c04020 0.58 +0.2 388,446 + PGA1_c04020 0.58 -1.4 388,454 - PGA1_c04020 0.59 +0.2 388,502 - PGA1_c04020 0.64 -1.0 388,645 - PGA1_c04020 0.81 -0.0 388,665 + PGA1_c04020 0.83 -1.4 388,665 + PGA1_c04020 0.83 -1.3 388,665 + PGA1_c04020 0.83 +0.3 388,673 - PGA1_c04020 0.84 -0.4 388,688 - PGA1_c04020 0.86 -0.9 388,917 - +0.2 388,922 - -0.9 388,969 - +0.1 389,013 + +0.4 389,013 + +0.1 389,013 + -0.2 389,021 - PGA1_c04030 0.11 +0.1 389,021 - PGA1_c04030 0.11 +0.3 389,021 - PGA1_c04030 0.11 +0.9 389,033 + PGA1_c04030 0.12 +0.3 389,045 + PGA1_c04030 0.14 +0.2 389,064 + PGA1_c04030 0.16 +0.2 389,071 + PGA1_c04030 0.17 -0.1 389,168 - PGA1_c04030 0.30 +1.2 389,169 - PGA1_c04030 0.30 -0.1 389,194 + PGA1_c04030 0.33 -0.8 389,202 - PGA1_c04030 0.34 +0.0 389,202 - PGA1_c04030 0.34 -1.1 389,323 - PGA1_c04030 0.50 -0.0 389,343 + PGA1_c04030 0.53 +1.0 389,371 + PGA1_c04030 0.56 -0.0 389,379 - PGA1_c04030 0.57 +0.5 389,379 - PGA1_c04030 0.57 -1.8 389,390 - PGA1_c04030 0.59 +0.7 389,401 - PGA1_c04030 0.60 -2.5 389,408 + PGA1_c04030 0.61 -0.3 389,408 + PGA1_c04030 0.61 -1.8 389,408 + PGA1_c04030 0.61 +0.1 389,408 + PGA1_c04030 0.61 +0.7 389,408 + PGA1_c04030 0.61 -0.1 389,408 + PGA1_c04030 0.61 -0.8 389,408 + PGA1_c04030 0.61 +0.4 389,408 + PGA1_c04030 0.61 -0.2 389,408 + PGA1_c04030 0.61 -1.0 389,408 + PGA1_c04030 0.61 -0.8 389,408 + PGA1_c04030 0.61 -0.3 389,408 + PGA1_c04030 0.61 -1.5 389,416 - PGA1_c04030 0.62 -0.8 389,416 - PGA1_c04030 0.62 +0.7 389,416 - PGA1_c04030 0.62 +0.2 389,416 - PGA1_c04030 0.62 +0.6 389,416 - PGA1_c04030 0.62 +0.8 389,416 - PGA1_c04030 0.62 +0.2 389,416 - PGA1_c04030 0.62 -0.1 389,416 - PGA1_c04030 0.62 -0.3 389,416 - PGA1_c04030 0.62 +0.1 389,416 - PGA1_c04030 0.62 -0.3 389,416 - PGA1_c04030 0.62 +0.6 389,416 - PGA1_c04030 0.62 -0.4 389,456 + PGA1_c04030 0.67 +0.4 389,474 + PGA1_c04030 0.70 -0.5 389,516 + PGA1_c04030 0.75 +1.9 389,562 + PGA1_c04030 0.81 -0.5 389,619 - PGA1_c04030 0.89 -1.2 389,629 - PGA1_c04030 0.90 -0.2 389,648 - -0.1 389,717 + -0.1 389,723 - +1.5 389,725 - -0.5 389,806 + +0.6
Or see this region's nucleotide sequence