Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02280 and PGA1_262p02290 are separated by 113 nucleotides PGA1_262p02290 and PGA1_262p02300 are separated by 25 nucleotides
PGA1_262p02280: PGA1_262p02280 - Phosphoenolpyruvate synthase/pyruvate phosphate dikinase, at 246,536 to 250,561
_262p02280
PGA1_262p02290: PGA1_262p02290 - sugar isomerase-like protein, at 250,675 to 251,583
_262p02290
PGA1_262p02300: PGA1_262p02300 - UDP-glucose/GDP-mannose dehydrogenase, at 251,609 to 252,880
_262p02300
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1 at 249.803 kb on - strand, within PGA1_262p02280 at 249.917 kb on - strand, within PGA1_262p02280 at 249.937 kb on + strand, within PGA1_262p02280 at 249.945 kb on - strand, within PGA1_262p02280 at 249.996 kb on + strand, within PGA1_262p02280 at 250.179 kb on - strand at 250.179 kb on - strand at 250.194 kb on - strand at 250.336 kb on + strand at 250.471 kb on - strand at 250.489 kb on + strand at 250.497 kb on - strand at 250.556 kb on + strand at 250.667 kb on - strand at 250.840 kb on - strand, within PGA1_262p02290 at 250.857 kb on + strand, within PGA1_262p02290 at 251.070 kb on - strand, within PGA1_262p02290 at 251.094 kb on - strand, within PGA1_262p02290 at 251.094 kb on - strand, within PGA1_262p02290 at 251.173 kb on + strand, within PGA1_262p02290 at 251.191 kb on - strand, within PGA1_262p02290 at 251.205 kb on + strand, within PGA1_262p02290 at 251.425 kb on - strand, within PGA1_262p02290 at 251.446 kb on + strand, within PGA1_262p02290 at 251.478 kb on + strand, within PGA1_262p02290 at 251.889 kb on - strand, within PGA1_262p02300 at 252.116 kb on + strand, within PGA1_262p02300 at 252.116 kb on + strand, within PGA1_262p02300 at 252.124 kb on - strand, within PGA1_262p02300 at 252.212 kb on - strand, within PGA1_262p02300 at 252.359 kb on - strand, within PGA1_262p02300 at 252.372 kb on - strand, within PGA1_262p02300 at 252.424 kb on + strand, within PGA1_262p02300 at 252.429 kb on + strand, within PGA1_262p02300 at 252.437 kb on - strand, within PGA1_262p02300 at 252.437 kb on - strand, within PGA1_262p02300 at 252.523 kb on - strand, within PGA1_262p02300
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 249,803 - PGA1_262p02280 0.81 -0.2 249,917 - PGA1_262p02280 0.84 +0.7 249,937 + PGA1_262p02280 0.84 +0.4 249,945 - PGA1_262p02280 0.85 -0.7 249,996 + PGA1_262p02280 0.86 -0.3 250,179 - -1.0 250,179 - -0.4 250,194 - -0.2 250,336 + -0.5 250,471 - +1.1 250,489 + +0.0 250,497 - -0.8 250,556 + +0.5 250,667 - -2.3 250,840 - PGA1_262p02290 0.18 -1.4 250,857 + PGA1_262p02290 0.20 -0.7 251,070 - PGA1_262p02290 0.43 -1.9 251,094 - PGA1_262p02290 0.46 -0.8 251,094 - PGA1_262p02290 0.46 -1.3 251,173 + PGA1_262p02290 0.55 -1.5 251,191 - PGA1_262p02290 0.57 -2.3 251,205 + PGA1_262p02290 0.58 -1.3 251,425 - PGA1_262p02290 0.83 -2.3 251,446 + PGA1_262p02290 0.85 -1.3 251,478 + PGA1_262p02290 0.88 -1.2 251,889 - PGA1_262p02300 0.22 -0.7 252,116 + PGA1_262p02300 0.40 -0.7 252,116 + PGA1_262p02300 0.40 -0.9 252,124 - PGA1_262p02300 0.40 -0.4 252,212 - PGA1_262p02300 0.47 +0.2 252,359 - PGA1_262p02300 0.59 -1.8 252,372 - PGA1_262p02300 0.60 -0.1 252,424 + PGA1_262p02300 0.64 -0.6 252,429 + PGA1_262p02300 0.64 +0.4 252,437 - PGA1_262p02300 0.65 -0.6 252,437 - PGA1_262p02300 0.65 -0.7 252,523 - PGA1_262p02300 0.72 +0.0
Or see this region's nucleotide sequence