Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03900 and PGA1_c03910 overlap by 4 nucleotides PGA1_c03910 and PGA1_c03920 are separated by 95 nucleotides PGA1_c03920 and PGA1_c03930 are separated by 1 nucleotides
PGA1_c03900: PGA1_c03900 - hypothetical protein, at 376,259 to 377,797
_c03900
PGA1_c03910: PGA1_c03910 - short chain dehydrogenase / reductase, at 377,794 to 378,552
_c03910
PGA1_c03920: PGA1_c03920 - Putative transmembrane protein (Alph_Pro_TM)., at 378,648 to 379,538
_c03920
PGA1_c03930: PGA1_c03930 - Predicted permeases, at 379,540 to 380,463
_c03930
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1 at 377.665 kb on + strand at 377.675 kb on + strand at 377.683 kb on - strand at 377.726 kb on - strand at 377.747 kb on + strand at 377.747 kb on + strand at 377.755 kb on - strand at 377.767 kb on - strand at 377.767 kb on - strand at 377.798 kb on + strand at 377.813 kb on - strand at 377.835 kb on - strand at 377.918 kb on + strand, within PGA1_c03910 at 377.926 kb on - strand, within PGA1_c03910 at 377.927 kb on + strand, within PGA1_c03910 at 377.935 kb on - strand, within PGA1_c03910 at 377.959 kb on + strand, within PGA1_c03910 at 377.988 kb on + strand, within PGA1_c03910 at 377.988 kb on + strand, within PGA1_c03910 at 377.988 kb on + strand, within PGA1_c03910 at 377.996 kb on - strand, within PGA1_c03910 at 378.001 kb on + strand, within PGA1_c03910 at 378.037 kb on - strand, within PGA1_c03910 at 378.086 kb on + strand, within PGA1_c03910 at 378.210 kb on - strand, within PGA1_c03910 at 378.254 kb on - strand, within PGA1_c03910 at 378.304 kb on - strand, within PGA1_c03910 at 378.304 kb on - strand, within PGA1_c03910 at 378.304 kb on - strand, within PGA1_c03910 at 378.304 kb on - strand, within PGA1_c03910 at 378.304 kb on - strand, within PGA1_c03910 at 378.306 kb on + strand, within PGA1_c03910 at 378.316 kb on - strand, within PGA1_c03910 at 378.399 kb on + strand, within PGA1_c03910 at 378.399 kb on + strand, within PGA1_c03910 at 378.399 kb on + strand, within PGA1_c03910 at 378.407 kb on - strand, within PGA1_c03910 at 378.407 kb on - strand, within PGA1_c03910 at 378.407 kb on - strand, within PGA1_c03910 at 378.427 kb on + strand, within PGA1_c03910 at 378.452 kb on - strand, within PGA1_c03910 at 378.481 kb on - strand at 378.626 kb on + strand at 378.644 kb on - strand at 378.725 kb on - strand at 378.773 kb on + strand, within PGA1_c03920 at 378.773 kb on + strand, within PGA1_c03920 at 378.933 kb on - strand, within PGA1_c03920 at 379.089 kb on - strand, within PGA1_c03920 at 379.144 kb on - strand, within PGA1_c03920 at 379.157 kb on + strand, within PGA1_c03920 at 379.237 kb on + strand, within PGA1_c03920 at 379.482 kb on + strand at 379.482 kb on + strand at 379.490 kb on - strand at 379.615 kb on + strand at 379.626 kb on + strand at 379.634 kb on - strand, within PGA1_c03930 at 379.750 kb on + strand, within PGA1_c03930 at 379.826 kb on - strand, within PGA1_c03930 at 379.929 kb on - strand, within PGA1_c03930 at 379.934 kb on - strand, within PGA1_c03930 at 379.963 kb on - strand, within PGA1_c03930 at 380.125 kb on - strand, within PGA1_c03930 at 380.234 kb on - strand, within PGA1_c03930 at 380.468 kb on + strand at 380.468 kb on + strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 377,665 + -0.0 377,675 + -0.8 377,683 - -0.2 377,726 - +0.0 377,747 + -0.4 377,747 + +1.2 377,755 - +0.1 377,767 - -0.2 377,767 - +0.5 377,798 + +0.0 377,813 - +0.2 377,835 - +0.0 377,918 + PGA1_c03910 0.16 +0.4 377,926 - PGA1_c03910 0.17 -0.7 377,927 + PGA1_c03910 0.18 -0.6 377,935 - PGA1_c03910 0.19 +0.1 377,959 + PGA1_c03910 0.22 -0.8 377,988 + PGA1_c03910 0.26 +0.3 377,988 + PGA1_c03910 0.26 +0.3 377,988 + PGA1_c03910 0.26 +0.3 377,996 - PGA1_c03910 0.27 +0.2 378,001 + PGA1_c03910 0.27 -0.3 378,037 - PGA1_c03910 0.32 +0.2 378,086 + PGA1_c03910 0.38 -0.2 378,210 - PGA1_c03910 0.55 +0.5 378,254 - PGA1_c03910 0.61 -0.2 378,304 - PGA1_c03910 0.67 +1.3 378,304 - PGA1_c03910 0.67 +0.7 378,304 - PGA1_c03910 0.67 -0.2 378,304 - PGA1_c03910 0.67 +0.2 378,304 - PGA1_c03910 0.67 -0.8 378,306 + PGA1_c03910 0.67 +0.0 378,316 - PGA1_c03910 0.69 -0.9 378,399 + PGA1_c03910 0.80 -1.5 378,399 + PGA1_c03910 0.80 -1.2 378,399 + PGA1_c03910 0.80 +1.0 378,407 - PGA1_c03910 0.81 -0.3 378,407 - PGA1_c03910 0.81 -0.2 378,407 - PGA1_c03910 0.81 +0.5 378,427 + PGA1_c03910 0.83 -0.4 378,452 - PGA1_c03910 0.87 +0.1 378,481 - +0.8 378,626 + -0.0 378,644 - -0.3 378,725 - -1.8 378,773 + PGA1_c03920 0.14 -1.2 378,773 + PGA1_c03920 0.14 -1.9 378,933 - PGA1_c03920 0.32 +0.2 379,089 - PGA1_c03920 0.49 -0.3 379,144 - PGA1_c03920 0.56 -1.3 379,157 + PGA1_c03920 0.57 -0.2 379,237 + PGA1_c03920 0.66 +0.5 379,482 + -0.1 379,482 + -1.4 379,490 - -0.7 379,615 + -1.5 379,626 + +0.4 379,634 - PGA1_c03930 0.10 +0.3 379,750 + PGA1_c03930 0.23 -0.7 379,826 - PGA1_c03930 0.31 +0.5 379,929 - PGA1_c03930 0.42 -1.4 379,934 - PGA1_c03930 0.43 +0.2 379,963 - PGA1_c03930 0.46 -0.6 380,125 - PGA1_c03930 0.63 +0.6 380,234 - PGA1_c03930 0.75 +0.2 380,468 + -0.2 380,468 + +0.0 380,476 - -0.3 380,476 - +1.2 380,476 - +1.0 380,476 - -0.3 380,476 - -0.5
Or see this region's nucleotide sequence