Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28000

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27990 and PGA1_c28000 are separated by 66 nucleotidesPGA1_c28000 and PGA1_c28010 are separated by 3 nucleotides PGA1_c27990: PGA1_c27990 - glucose-6-phosphate 1-dehydrogenase, at 2,918,187 to 2,919,647 _c27990 PGA1_c28000: PGA1_c28000 - phosphogluconate dehydratase Edd, at 2,919,714 to 2,921,537 _c28000 PGA1_c28010: PGA1_c28010 - KHG/KDPG aldolase, at 2,921,541 to 2,922,188 _c28010 Position (kb) 2919 2920 2921 2922Strain fitness (log2 ratio) -2 -1 0 1at 2918.785 kb on - strand, within PGA1_c27990at 2922.258 kb on - strandat 2922.271 kb on + strandat 2922.285 kb on + strandat 2922.285 kb on + strandat 2922.285 kb on + strandat 2922.293 kb on - strandat 2922.293 kb on - strandat 2922.387 kb on + strandat 2922.425 kb on - strandat 2922.450 kb on + strandat 2922.496 kb on + strandat 2922.501 kb on + strandat 2922.509 kb on - strandat 2922.509 kb on - strandat 2922.509 kb on - strandat 2922.510 kb on + strandat 2922.518 kb on - strandat 2922.532 kb on - strandat 2922.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,918,785 - PGA1_c27990 0.41 -1.3
2,922,258 - -0.0
2,922,271 + -0.7
2,922,285 + -1.9
2,922,285 + +0.4
2,922,285 + -0.0
2,922,293 - -0.8
2,922,293 - +0.5
2,922,387 + +0.1
2,922,425 - +0.3
2,922,450 + -0.4
2,922,496 + +0.2
2,922,501 + -0.1
2,922,509 - -0.4
2,922,509 - -0.2
2,922,509 - +0.6
2,922,510 + +0.0
2,922,518 - -0.2
2,922,532 - -0.1
2,922,534 + -0.1

Or see this region's nucleotide sequence