Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24000 and PGA1_c24010 are separated by 48 nucleotides PGA1_c24010 and PGA1_c24020 are separated by 129 nucleotides
PGA1_c24000: PGA1_c24000 - cobyric acid synthase CobQ, at 2,504,767 to 2,506,227
_c24000
PGA1_c24010: PGA1_c24010 - hypothetical protein, at 2,506,276 to 2,507,685
_c24010
PGA1_c24020: PGA1_c24020 - putative outer membrane efflux protein, at 2,507,815 to 2,509,233
_c24020
Position (kb)
2506
2507
2508 Strain fitness (log2 ratio)
-1
0
1
2 at 2506.259 kb on + strand at 2506.285 kb on + strand at 2506.374 kb on - strand at 2506.557 kb on + strand, within PGA1_c24010 at 2506.649 kb on + strand, within PGA1_c24010 at 2506.672 kb on - strand, within PGA1_c24010 at 2506.676 kb on + strand, within PGA1_c24010 at 2506.692 kb on - strand, within PGA1_c24010 at 2506.723 kb on - strand, within PGA1_c24010 at 2506.765 kb on + strand, within PGA1_c24010 at 2506.814 kb on - strand, within PGA1_c24010 at 2506.865 kb on + strand, within PGA1_c24010 at 2506.980 kb on - strand, within PGA1_c24010 at 2507.009 kb on - strand, within PGA1_c24010 at 2507.027 kb on - strand, within PGA1_c24010 at 2507.027 kb on - strand, within PGA1_c24010 at 2507.054 kb on - strand, within PGA1_c24010 at 2507.059 kb on - strand, within PGA1_c24010 at 2507.098 kb on + strand, within PGA1_c24010 at 2507.177 kb on + strand, within PGA1_c24010 at 2507.189 kb on + strand, within PGA1_c24010 at 2507.197 kb on - strand, within PGA1_c24010 at 2507.264 kb on - strand, within PGA1_c24010 at 2507.269 kb on - strand, within PGA1_c24010 at 2507.283 kb on - strand, within PGA1_c24010 at 2507.324 kb on - strand, within PGA1_c24010 at 2507.523 kb on + strand, within PGA1_c24010 at 2507.548 kb on - strand at 2507.706 kb on + strand at 2507.773 kb on + strand at 2507.783 kb on + strand at 2507.791 kb on - strand at 2507.799 kb on - strand at 2507.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 2,506,259 + +0.3 2,506,285 + -0.2 2,506,374 - -0.1 2,506,557 + PGA1_c24010 0.20 +0.8 2,506,649 + PGA1_c24010 0.26 -0.3 2,506,672 - PGA1_c24010 0.28 +0.7 2,506,676 + PGA1_c24010 0.28 +0.6 2,506,692 - PGA1_c24010 0.30 +0.5 2,506,723 - PGA1_c24010 0.32 +0.9 2,506,765 + PGA1_c24010 0.35 +0.1 2,506,814 - PGA1_c24010 0.38 +0.4 2,506,865 + PGA1_c24010 0.42 +1.8 2,506,980 - PGA1_c24010 0.50 +0.0 2,507,009 - PGA1_c24010 0.52 +0.5 2,507,027 - PGA1_c24010 0.53 +1.0 2,507,027 - PGA1_c24010 0.53 +0.6 2,507,054 - PGA1_c24010 0.55 +0.5 2,507,059 - PGA1_c24010 0.56 +0.9 2,507,098 + PGA1_c24010 0.58 -0.5 2,507,177 + PGA1_c24010 0.64 +1.1 2,507,189 + PGA1_c24010 0.65 -1.1 2,507,197 - PGA1_c24010 0.65 +0.4 2,507,264 - PGA1_c24010 0.70 -0.0 2,507,269 - PGA1_c24010 0.70 -0.3 2,507,283 - PGA1_c24010 0.71 -0.6 2,507,324 - PGA1_c24010 0.74 +1.7 2,507,523 + PGA1_c24010 0.88 +0.1 2,507,548 - +0.0 2,507,706 + +0.8 2,507,773 + +1.5 2,507,783 + +0.0 2,507,791 - -0.2 2,507,799 - +0.5 2,507,801 - -0.9
Or see this region's nucleotide sequence