Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24010

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24000 and PGA1_c24010 are separated by 48 nucleotidesPGA1_c24010 and PGA1_c24020 are separated by 129 nucleotides PGA1_c24000: PGA1_c24000 - cobyric acid synthase CobQ, at 2,504,767 to 2,506,227 _c24000 PGA1_c24010: PGA1_c24010 - hypothetical protein, at 2,506,276 to 2,507,685 _c24010 PGA1_c24020: PGA1_c24020 - putative outer membrane efflux protein, at 2,507,815 to 2,509,233 _c24020 Position (kb) 2506 2507 2508Strain fitness (log2 ratio) -1 0 1 2at 2506.259 kb on + strandat 2506.285 kb on + strandat 2506.374 kb on - strandat 2506.557 kb on + strand, within PGA1_c24010at 2506.649 kb on + strand, within PGA1_c24010at 2506.672 kb on - strand, within PGA1_c24010at 2506.676 kb on + strand, within PGA1_c24010at 2506.692 kb on - strand, within PGA1_c24010at 2506.723 kb on - strand, within PGA1_c24010at 2506.765 kb on + strand, within PGA1_c24010at 2506.814 kb on - strand, within PGA1_c24010at 2506.865 kb on + strand, within PGA1_c24010at 2506.980 kb on - strand, within PGA1_c24010at 2507.009 kb on - strand, within PGA1_c24010at 2507.027 kb on - strand, within PGA1_c24010at 2507.027 kb on - strand, within PGA1_c24010at 2507.054 kb on - strand, within PGA1_c24010at 2507.059 kb on - strand, within PGA1_c24010at 2507.098 kb on + strand, within PGA1_c24010at 2507.177 kb on + strand, within PGA1_c24010at 2507.189 kb on + strand, within PGA1_c24010at 2507.197 kb on - strand, within PGA1_c24010at 2507.264 kb on - strand, within PGA1_c24010at 2507.269 kb on - strand, within PGA1_c24010at 2507.283 kb on - strand, within PGA1_c24010at 2507.324 kb on - strand, within PGA1_c24010at 2507.523 kb on + strand, within PGA1_c24010at 2507.548 kb on - strandat 2507.706 kb on + strandat 2507.773 kb on + strandat 2507.783 kb on + strandat 2507.791 kb on - strandat 2507.799 kb on - strandat 2507.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,506,259 + +0.3
2,506,285 + -0.2
2,506,374 - -0.1
2,506,557 + PGA1_c24010 0.20 +0.8
2,506,649 + PGA1_c24010 0.26 -0.3
2,506,672 - PGA1_c24010 0.28 +0.7
2,506,676 + PGA1_c24010 0.28 +0.6
2,506,692 - PGA1_c24010 0.30 +0.5
2,506,723 - PGA1_c24010 0.32 +0.9
2,506,765 + PGA1_c24010 0.35 +0.1
2,506,814 - PGA1_c24010 0.38 +0.4
2,506,865 + PGA1_c24010 0.42 +1.8
2,506,980 - PGA1_c24010 0.50 +0.0
2,507,009 - PGA1_c24010 0.52 +0.5
2,507,027 - PGA1_c24010 0.53 +1.0
2,507,027 - PGA1_c24010 0.53 +0.6
2,507,054 - PGA1_c24010 0.55 +0.5
2,507,059 - PGA1_c24010 0.56 +0.9
2,507,098 + PGA1_c24010 0.58 -0.5
2,507,177 + PGA1_c24010 0.64 +1.1
2,507,189 + PGA1_c24010 0.65 -1.1
2,507,197 - PGA1_c24010 0.65 +0.4
2,507,264 - PGA1_c24010 0.70 -0.0
2,507,269 - PGA1_c24010 0.70 -0.3
2,507,283 - PGA1_c24010 0.71 -0.6
2,507,324 - PGA1_c24010 0.74 +1.7
2,507,523 + PGA1_c24010 0.88 +0.1
2,507,548 - +0.0
2,507,706 + +0.8
2,507,773 + +1.5
2,507,783 + +0.0
2,507,791 - -0.2
2,507,799 - +0.5
2,507,801 - -0.9

Or see this region's nucleotide sequence